Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0401 ATGAAGAAGGGAAAAGATGAACACACTCCTAAAGGAATTCTAGAATTCTGTGCTGAAAGCTTTGTACCTGAAATGCAAACTTCCTGTCTTGGTAGCTCAGAATCCAAAAGGTCAAGAGCACGTTCACACTGGCGTTCATTTCTCAATCGGTTCACAAAGAATTCAGTTATTCGTTTCCCATCCTTAACTCCTGTCATGTCAAAGAGATCAAGAGGAAAAAGTCAAAGTGCAAGAGAGAATGTGCTTGCTGTAAATACTTTCAACAGTTCATGGAAGAATTTCAGCTTAGTTGAACTCCAGAATGCAACAAAGAATTTTCACCACGAAAATTTGATTGGAAAGGGTGGTTATGCTGAAGTTTATAAGGGTCGTTTAAAAGATGGGCAGTTCATTGCCATTAAGCGGCTGACTCAAGGAACACCAGAAGAGAGGGTAATGAGCTTTTTACATGAGCTTGGCATCATAGCTCATGTAAACCATCCCAATACTGCTAAGTTGATAGGGTATGGCGTTCAAGGAGGACTGCACCTTGTTCTGCAGTTATCGCCCCTCGGGAGTTTAGGATCTCTACTTCATGTTACAAAGAGTAAACTAGAGTGGAGTAGTAGGTATAAAATTGCTTTAGGAACAGCTGATGGCCTACGGTACCTTCACGAGCATTGTCAAAGGCGAATCATTCATAGAGATATAAAAGCTGATAACATTTTGCTCACAGAGGATTTTGAGCCTCAGATTTGTGATTTTGGTCTTGCAAAGTGGCTACCAAAGCAGTGGACGCACTTCAACGTAACAAAGTTTGAAGGCACATTTGGCTATTTTGCGCCCGAATACTTCATGCATGGCATAGTGGATGAAAAAACGGATATATTTTCTTTTGGGGTGCTACTTTTGGAGCTCATTACAGGACGCCGAGCTGTGGACCATATGAAGCAAAGCCTTGTGGTTTGGGTGTGTTTTCTTTTGCAGAATTTGAACATACCATCACATGCTGTCATAGATTAA 1002 0.4122 MKKGKDEHTPKGILEFCAESFVPEMQTSCLGSSESKRSRARSHWRSFLNRFTKNSVIRFPSLTPVMSKRSRGKSQSARENVLAVNTFNSSWKNFSLVELQNATKNFHHENLIGKGGYAEVYKGRLKDGQFIAIKRLTQGTPEERVMSFLHELGIIAHVNHPNTAKLIGYGVQGGLHLVLQLSPLGSLGSLLHVTKSKLEWSSRYKIALGTADGLRYLHEHCQRRIIHRDIKADNILLTEDFEPQICDFGLAKWLPKQWTHFNVTKFEGTFGYFAPEYFMHGIVDEKTDIFSFGVLLLELITGRRAVDHMKQSLVVWVCFLLQNLNIPSHAVID* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0401 333 Gene3D Transferase(Phosphotransferase) domain 1 183 331 - -
Vvi14g0401 333 PANTHER OS08G0249100 PROTEIN 33 326 IPR046958 -
Vvi14g0401 333 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 183 333 - -
Vvi14g0401 333 SUPERFAMILY Protein kinase-like (PK-like) 91 318 IPR011009 -
Vvi14g0401 333 Gene3D Phosphorylase Kinase; domain 1 66 179 - -
Vvi14g0401 333 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 83 181 - -
Vvi14g0401 333 ProSitePatterns Protein kinases ATP-binding region signature. 112 134 IPR017441 GO:0005524
Vvi14g0401 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Vvi14g0401 333 ProSiteProfiles Protein kinase domain profile. 106 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0401 333 SMART serkin_6 106 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0401 333 Pfam Protein tyrosine and serine/threonine kinase 108 319 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0401 Vvi-Chr14 4219953 4227234 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0401 87 321 Trihelix Transcription Factor Family AT1G70460 43.568 9.76e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vvi14g0401 PK_Tyr_Ser-Thr 1.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0401 - - vri:117930026 623.624