Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0400 ATGAACTTTTCCTGGCAGAACAAAATAGGGAATGGACTATACGGGAATGTTTACAATGGGATATTGCCAGATGGGTCTGAAGTTGCATTGAAAAGGTTCAAAAACTGCACTGCTGCTGGGGATGCAACATTCACACATGAAGTAGTGGTGATTGCAAGTGTTAGGCATGTGAATCTTGTTGCTTTGAGAGGCTACTGTACTGCAACACATCCTTGA 216 0.4259 MNFSWQNKIGNGLYGNVYNGILPDGSEVALKRFKNCTAAGDATFTHEVVVIASVRHVNLVALRGYCTATHP* 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0400 71 Gene3D Phosphorylase Kinase; domain 1 1 70 - -
Vvi14g0400 71 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 67 - -
Vvi14g0400 71 ProSiteProfiles Protein kinase domain profile. 3 71 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0400 71 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vvi14g0400 71 Pfam Protein tyrosine and serine/threonine kinase 5 70 IPR001245 GO:0004672|GO:0006468
Vvi14g0400 71 SUPERFAMILY Protein kinase-like (PK-like) 2 68 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0400 Vvi-Chr14 4198808 4199023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0400 2 71 Receptor kinase-like Gene Family AT2G48010 72.857 2.11e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vvi14g0400 PK_Tyr_Ser-Thr 2.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0400 - - oeu:111375852 125.561