Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0399 ATGGTGGTGGAAGGCATTCCCAGGCCTTCTTTTCGTGATGTCCCAACACAGTGCAATTATGTTCTTGAAGGGATCCGCGTAATTCGATCTGAATACCTCCGAACCGATGGGTACTTTCTTCCTCCTTCAAGTACTACCAAGGTTTGTTGGGAGTCCTACCGGCTCTTGGTAAGCGACTTGGTGAGTGGTTTTGACATAGAATTGGCTTGTGGCTATCATCCTGAATGGGTTTCAGAGAGTTGTATGAATATTTCATCTGGGTCAGAGTTTGAAAGCTTGATTCCAGAGTCCAAGTTGCAGGAAGTTAGGTGTTACTGCAACCAGTCTCTGGGCAATAGTACTTCTTGTGCATTGTGTAAAGAGAATTTGGGGAGTCTCCAGGCATCTTACCTTAGTGGATCAGGGATTGGAAATGCCTCTGACTGTGCTGGATATTCCTTTATGTATGCAGCTGGTTGGGTTAATCCATATGGCCCAACAGATGTTGCCACTGCGAAGTGTCTGTTCTCACTTGACTTCTCCCCACATCATATAAGAAATAAGAGATATAAGATTCTGATTTCTGGGGCTGTGTTAGGTTGTGTTATTGGGTTCTTTGGGGCTTTTGCAGCAGCTTGGTTTCTCTGGACAAGACACAGAAAATTGGAGAGGGAGATGGAAGTTTGTGCTAAAATGGAGACTAGTTTGGACTCAGGTTTTGGCTCTATGACTGGGAGTGACACACTGGTGAAGTTCAAGTTTGAGGAAATCAAAAGGGCTACCATGAATTTCTCAAGGGAGAATATAATTGGGCAGGGAGGATATGGGAATGTCTACAAGGGGATACTACCAGATGGGTCTGAAGTTGCCTTCAAAAGGTTCAAGAACTGCTCTGCATCTGGGGATGCAGTTTTTACGCATGAAGTAGAGGTCTTAGCTAGCGTTAGGCACATGAATCTTGTTGTTTTGAGAGGCTATTGTACTGCGACGGTTCCCATGGAAGGCCACCAGAGAATAATTGTGTGCGACTTGATGCCTAATGGAAGCCTCCATGACCATCTTTTTGGATCAGTGGGAAAGAAACTCAGCTGGCCAATTCGCCAGAACATTGCCCTTGGAACAGCGAGGGGGCTGGCTTATTTGCACTATGGGGCACAGCCAGCTATCATCCATAGAGATATCAAAGCAAGTAACATACTTTTGGATGAAACTTTTGAGGCAAAAGTGGCAGATTTCGGCCTTGCAAAGGTCAATCCAGAGGGGATAACACACTTGAGCACCAGAGTGGCTGGGACTCTTGGCTATGTTGCACCAGAGTATGCCTTGTTCGGGAAGTTAACTGAGAGAAGCGATGTTTACAGCTTTGGGGTTGTGCTTTTGGAGCTTCTGAGTGGGAAGAAAGCATTCATGGCAGCCAATGGACCACAGGCTTTGCTTTTGACAGAATGGGCTTGGTCATTAGTGAAGGAAGGAAGACCAATCGATGTTGTGGATGAAGAAATGCCTGAATTGGGGTTGACAGAAGTAATGGAGCGGCACGTTCTTATTGCTGTTCTTTGTTGCCATCCAGTGTTAGAATCTAGGCCAACAATGGACAAGATTGTGAAGATGTTGGAAACCAACCTTCCAATTCCATCCATTCTTATAGCATCTGCTGCATTGTGA 1644 0.455 MVVEGIPRPSFRDVPTQCNYVLEGIRVIRSEYLRTDGYFLPPSSTTKVCWESYRLLVSDLVSGFDIELACGYHPEWVSESCMNISSGSEFESLIPESKLQEVRCYCNQSLGNSTSCALCKENLGSLQASYLSGSGIGNASDCAGYSFMYAAGWVNPYGPTDVATAKCLFSLDFSPHHIRNKRYKILISGAVLGCVIGFFGAFAAAWFLWTRHRKLEREMEVCAKMETSLDSGFGSMTGSDTLVKFKFEEIKRATMNFSRENIIGQGGYGNVYKGILPDGSEVAFKRFKNCSASGDAVFTHEVEVLASVRHMNLVVLRGYCTATVPMEGHQRIIVCDLMPNGSLHDHLFGSVGKKLSWPIRQNIALGTARGLAYLHYGAQPAIIHRDIKASNILLDETFEAKVADFGLAKVNPEGITHLSTRVAGTLGYVAPEYALFGKLTERSDVYSFGVVLLELLSGKKAFMAANGPQALLLTEWAWSLVKEGRPIDVVDEEMPELGLTEVMERHVLIAVLCCHPVLESRPTMDKIVKMLETNLPIPSILIASAAL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0399 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 382 394 IPR008271 GO:0004672|GO:0006468
Vvi14g0399 547 ProSitePatterns Protein kinases ATP-binding region signature. 263 285 IPR017441 GO:0005524
Vvi14g0399 547 CDD STKc_IRAK 263 532 - -
Vvi14g0399 547 SUPERFAMILY Protein kinase-like (PK-like) 235 532 IPR011009 -
Vvi14g0399 547 SMART serkin_6 257 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0399 547 ProSiteProfiles Protein kinase domain profile. 257 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0399 547 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 338 539 - -
Vvi14g0399 547 Pfam SPARK 11 140 IPR043891 -
Vvi14g0399 547 PANTHER OS01G0750732 PROTEIN 107 534 - -
Vvi14g0399 547 Pfam Protein kinase domain 258 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0399 547 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 218 336 - -
Vvi14g0399 547 Gene3D Phosphorylase Kinase; domain 1 219 336 - -
Vvi14g0399 547 Gene3D Transferase(Phosphotransferase) domain 1 338 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0399 Vvi-Chr14 4193997 4195640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0399 2 534 Receptor kinase-like Gene Family AT2G48010 58.240 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vvi14g0399 Pkinase 8.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0399 - - vvi:100258819 1104.74