Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0355 ATGTTTGTTTCTGGCGCGGAATCTGGACACGAAAATAGTGCAATTCCAGGAACGGTTTTAATCCCTACCCGGTTTGTGTGGCCTTATGGGGGAAGAAGGGTGCTTCTCAGTGGCTCCTTTACAAGGTGGTCAGAGCACATACCTATGTCTCCTATTGAGGGTTGCCCTACTGTGTTTCAAGTTATTTGGAGCTTGGCGCCGGGTTATCACCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAGCATCAACCTTTTGTAAGTGGGAATTATGGGGTAGTGAACACGATCTTCTTACCTAGGGAACCTGATGTGGTTCCTGCAGTTTTTAGTCCAGATACACCTGGCGGATCTAACATGGATTTGGACAATGATCCTTTTCCTCGTGGGGAGGTAATTCCTAGGATATCAGAGGCAGATTTAGAGGTCTCTCGCCATCGTGTATCTGAGTTCTTGTCTACACATATTGCTTATGAGTTGCTCCCTGAATCGGGCAAGGTCATTGCCTTGGACGTTAATTTACCTGTGAAACAAGCATTTCATACTCTCTATGAACAGGGAATTCCTGTGGCTCCTCTCTGGGATTTTTGCAAGGGTCAGTTTGTTGGAGTGCTTAGTGCATTAGACTTTATATTAATTCTGAGAGAGCTTGGAAACCATGGATCAAATTTAACAGAGGAAGAGCTTGAGACACATACTATCTCAGCTTGGAAAGAGGGAAAATTACATCTCAGACAAATTGATGGCAGTGGGAGACTGTGCCCTAGACATCTCGTCCATGCTGGGCCTTATGATTCTTTGAAAGATGTCACTTTGAAAATTTTGCAAAACAAGGTCGCCACGGTTCCCATCATCCATTCTGCTTCTCAGGATGGTTCATTTCCACAGCTACTACATCTTGCTTCTCTGTCTGGAATACTAAAATGTATTTGCAGGCATTTTAGACATTCTTCTAGTTCCTTGCCTATTCTTCAACAACCAATCTGTTCAATTCCTGTAGGCACATGGGTTCCAAAGATTGGGGAATCAAATGGACAGCCGTTTGCAATGTTGAGACCAAATGCCTCTCTTGGTGCTGCCTTGTCTTTGTTAGTCCAAGCTGAAGTTAGTTCAATACCAATAGTGGATGATAATGATTCATTGCTGGATATATATTCACGGAGTGATATCACTGCTTTGGCAAAAGACAGGGCATATGCACAGATTCACCTTGATAACATGAGTATTCATCAGAAAAGAAGGTTTATATGA 1257 0.4312 MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQVIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPREPDVVPAVFSPDTPGGSNMDLDNDPFPRGEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIALDVNLPVKQAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKLHLRQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHSASQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQPFAMLRPNASLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIHLDNMSIHQKRRFI* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0355 418 Pfam Glycogen recognition site of AMP-activated protein kinase 21 99 IPR032640 -
Vvi14g0355 418 CDD E_set_AMPKbeta_like_N 22 100 - -
Vvi14g0355 418 SUPERFAMILY E set domains 21 100 IPR014756 -
Vvi14g0355 418 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 139 413 - -
Vvi14g0355 418 FunFam Sucrose nonfermenting 4-like protein 18 102 - -
Vvi14g0355 418 Gene3D - 324 416 IPR046342 -
Vvi14g0355 418 ProSiteProfiles CBS domain profile. 162 224 IPR000644 -
Vvi14g0355 418 SUPERFAMILY CBS-domain pair 348 403 IPR046342 -
Vvi14g0355 418 ProSiteProfiles CBS domain profile. 344 403 IPR000644 -
Vvi14g0355 418 Gene3D Immunoglobulins 18 101 IPR013783 -
Vvi14g0355 418 Gene3D - 139 322 IPR046342 -
Vvi14g0355 418 Pfam CBS domain 349 393 IPR000644 -
Vvi14g0355 418 SUPERFAMILY CBS-domain pair 148 318 IPR046342 -
Vvi14g0355 418 SMART cbs_1 168 217 IPR000644 -
Vvi14g0355 418 SMART cbs_1 349 397 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0355 Vvi-Chr14 3424767 3439860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0355 30 92 Protein tyrosine phosphatase (PTP) family AT3G52180 37.500 3.93e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0355 - - vvi:100252910 845.114