Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0350 ATGGGCTTTGGGCCAAAATGGCTGGGTTGGATGTGGAGTTGCATATTTTCAGCAAAATTTTCAATCTTAGTGAATGGGGTTCCTGCTGGCTTTTTCCCGAGTTCTAAGGGGCTTCGCCAAGGAGATCCTCTATCTCCTTACCTCTTTGTCATGGGAATGGAATTCGAGCCTGTTGAAAATATAACAGATCTAAAGCCCGAGTGTTGTGCTTGTACCCCTGCTTCAAGTTCCTTATCTGAATTTGGAAAACTTGACGGAATATCTGGTTGCAAGGTGTTGGTTTCCTCTGAAGAGAAACTCTTATTTGACGACTTTATTAATATTATATGTTCATTTGATCCAGATATTTTGATTGGCTGGGATATTCAAGGTGGCTCCCTTGGTTTCTTGGCTGAAAGGGCTTCACATCTTGGTATAGGTTTACTTAATAAAATATCTAGGACACCATCTGAAACCAAGACAGCTTCTAGAAATTTTGAAATTCCTGAGAAAAGAGTAGCTGATGAAATGCTTCCTGAAAATTTGGTTGATGATTCGGTTTTACTTGAAGAGGCAATTATTGAGGATGAATGGGGTCGGACTCATGCAAGTGGTGTCCATGTCGGTGGTAGAATTGTCCTTAATGTTTGGCGACTGATGCGTGGTGAAATTAAACTTAATATGTACACTGCTGAATCTGTAGCAGAAGCTGTTTTGAGGCAAAAAATTCCATCAATTCGTAATAGAGTATTGACTAAGTGGTTTTCAAGTGGTCCTGGAAGGGCAAGATATCGTAGTATTGAATATGTCATACAGAGAGCAAAGCTGAATTTTGAGATAATGAACCAACTTGACATGATAAACCGGACATCGGAGCTTGCTCGTGTGTTTGGAATTGATTTTTTTTCTGTTCTCTCCCGAGGTTCGCAGTACCATGTTGAATCAATGTTTCTAAGACTGGCACATACTCAGAACTTCCTTGCGATTTCTCCTGGGCCCCAACAGGTTGCTACTCAACCTGCTATGGAGTGCCTGCCTCTTGTAATGGAGCCAGAATCTGGTTTTTATGCCGATCCAGTAGTGGTTTTGGATTTTCAGTCTCTTTATCCATCTATGATAATTGCATACAACCTCTGCTATTCTACATGCCTTGGAAAAGTTGCACCTTCAAAGGCAGATGTACTTGGTGTTAGCATATATTCACCAGATCCGCATGCTTTACATGATTTAAAAGATCAAATACTGCTCACTCCAAATGGTGTTATGTATGTGCCTTCAAAGGCACGTAAAGGCGTGCTGCCTCGTTTGTTGGAAGAAATATTGTCAACTAGAATAATGGTGAAAAAAGCAATGAAGAAGTTGGTTCCTTCCCAGCAGGTTCTTCAAAGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTGATAGCAAATGTAACATATGGTTATACAGCTGCTGGATATAGTGGTCGTATGCCTTGTGCAGAGCTTGCAGACAGCATTGTTCAATGTGGCCGTAGGACACTGGAAAATGCTATTTCACTTGTAAATACACATGATAAATGGAAAGCTAAAGTTATTTATGGTGATACTGACAGCATGTTTGTCCTCCTTAAAGGCCGCACTGTCAAAGAATCTTTCCAAATTGGACATGAGATTGCATCTGCAGTAACTGCAATGAACCCTAATCCAGTTACATTGAAAATGGAGAAAGTCTATCATCCTTGCTTCCTTCTTACCAAGAAACGTTACGTTGGTTACAGTTATGAGAGCCCTGATCAAATTGAACCCACCTTTGATGCTAAAGGTATTGAGACAGTACGTAGAGACACATGTGGCGCTGTTGCTAAGACAATGGAGCAATCCCTGAGACTTTTTTTTGAACATCAAGACATTTCCAAGGTTAAAGTATACTTGCAGAGACAGTGGAGAAGGATTCTATCTGGTAGGGTGTCTCTTCAGGATTTTGTTTTTGCAAAGGAGGTTCGCTTAGGTACATACAGTTCAAGAGCTTCTTCACTCCCACCGGCGGCAATTGTGGCCATCAAAGCAATGAGAGCCGATCCCAGGGCTGAACCATGCTATGCGGAGAGAGTACCTTATGTTGTAATCCATGGGGAGCCTGGAGCTCGCCTGGTTGATTTGGTTGTGGATCCATTGGATCTTTTGGCAATTGATTCTCCCTACAGATTAAATGATCAATACTACATCAACAAGCAGATAATCCCAGCTTTGCAAAGGGTATTTGGACTTGTTGGAGCTGATTTGTACCAGTGGTTTTCAGAGATGCCTCGCCCAGTTAGGGAAGTTTATGCTAAACACAAGTCTCATGCTCCAAATCCATACCGGACCAGAATTGATTTTTACTATCTCTCAAAACACTGTATCCTATGTGGTGAGCTGTCCCCGGCATCAGCCCATATATGCGATAAATGTTCTAAAGATGGAACTGCTGTTGCTGCAGCTGTGATTGGAAGAACTGCAAAATTAGAGAGAGATATTCAACACCTTGCAGCTATATGCCGACATTGCGGAGGTGGAGATTGGATCGTGGAAAGCGGGGTGAAGTGCACATCACTTGCATGCTCAGTGTTCTATGAAAGACGGAAAGTTCAGAAAGACCTGCAGGGTCTCTCTTCTGTTGCTACAGAAGCAGGCTTTTACCCCAAGTGTATGGTTGAGTGGTTCTGA 2667 0.4207 MGFGPKWLGWMWSCIFSAKFSILVNGVPAGFFPSSKGLRQGDPLSPYLFVMGMEFEPVENITDLKPECCACTPASSSLSEFGKLDGISGCKVLVSSEEKLLFDDFINIICSFDPDILIGWDIQGGSLGFLAERASHLGIGLLNKISRTPSETKTASRNFEIPEKRVADEMLPENLVDDSVLLEEAIIEDEWGRTHASGVHVGGRIVLNVWRLMRGEIKLNMYTAESVAEAVLRQKIPSIRNRVLTKWFSSGPGRARYRSIEYVIQRAKLNFEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYHVESMFLRLAHTQNFLAISPGPQQVATQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMIIAYNLCYSTCLGKVAPSKADVLGVSIYSPDPHALHDLKDQILLTPNGVMYVPSKARKGVLPRLLEEILSTRIMVKKAMKKLVPSQQVLQRIFNARQLALKLIANVTYGYTAAGYSGRMPCAELADSIVQCGRRTLENAISLVNTHDKWKAKVIYGDTDSMFVLLKGRTVKESFQIGHEIASAVTAMNPNPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIEPTFDAKGIETVRRDTCGAVAKTMEQSLRLFFEHQDISKVKVYLQRQWRRILSGRVSLQDFVFAKEVRLGTYSSRASSLPPAAIVAIKAMRADPRAEPCYAERVPYVVIHGEPGARLVDLVVDPLDLLAIDSPYRLNDQYYINKQIIPALQRVFGLVGADLYQWFSEMPRPVREVYAKHKSHAPNPYRTRIDFYYLSKHCILCGELSPASAHICDKCSKDGTAVAAAVIGRTAKLERDIQHLAAICRHCGGGDWIVESGVKCTSLACSVFYERRKVQKDLQGLSSVATEAGFYPKCMVEWF* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0350 888 Gene3D - 595 760 IPR042087 -
Vvi14g0350 888 SUPERFAMILY Ribonuclease H-like 83 316 IPR012337 -
Vvi14g0350 888 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 82 881 IPR030559 GO:0006281|GO:0016035|GO:0019985
Vvi14g0350 888 FunFam DNA polymerase 595 762 - -
Vvi14g0350 888 CDD POLBc_zeta 301 749 - -
Vvi14g0350 888 SMART polmehr3 46 532 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vvi14g0350 888 Pfam C4-type zinc-finger of DNA polymerase delta 787 860 IPR025687 -
Vvi14g0350 888 Gene3D - 60 336 IPR036397 GO:0003676
Vvi14g0350 888 SUPERFAMILY DNA/RNA polymerases 340 754 IPR043502 -
Vvi14g0350 888 CDD DNA_polB_zeta_exo 71 275 - -
Vvi14g0350 888 Gene3D Palm domain of DNA polymerase 339 584 IPR023211 -
Vvi14g0350 888 FunFam DNA polymerase zeta 420 479 - -
Vvi14g0350 888 Gene3D Helix hairpin bin 419 479 - -
Vvi14g0350 888 PRINTS DNA-directed DNA-polymerase family B signature 353 366 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vvi14g0350 888 PRINTS DNA-directed DNA-polymerase family B signature 462 474 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vvi14g0350 888 PRINTS DNA-directed DNA-polymerase family B signature 518 526 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vvi14g0350 888 Pfam DNA polymerase family B 294 741 IPR006134 GO:0000166|GO:0003677
Vvi14g0350 888 Pfam DNA polymerase family B, exonuclease domain 86 153 IPR006133 -
Vvi14g0350 888 ProSitePatterns DNA polymerase family B signature. 520 528 IPR017964 GO:0000166|GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0350 Vvi-Chr14 3357799 3368344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0350 107 867 Core DNA Replication Machinery Family AT5G63960 28.700 5.39e-84 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0350 K02350 - vvi:100263126 1605.11