Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0324 ATGGCATACAATCAGAACAATCCCGTTGCTGTGGCAGTGTTTTTCTCTCTTAGTTGTCTTGCTCTACTATCAACTTCCACATTCCTCTGCAAAAACTCCACTGATTGTCAATCTCTGCTCAAATTCAAACAAGGCATAACAGGTGATCCAGATGGTCATCTCCAAGATTGGAATGAAACCAGGTTCTTCTGCAACTGGACAGGGATTACATGCCACCAGCAACTTAAGAACCGGGTCATAGCCATTGAGCTCATAAACATGCGCTTACAGGGAGTTATCTCACCATACATATCCAATCTATCCCATCTCACCACCCTCTCTTTGCAAGCCAACAGCTTGTATGGAGAGATCCCAGCTACCATTGGAGAGCTTTCTGAGTTAACATTCATAAACATGAGTGGTAATAAGCTTGGGGGCAATATTCCAGCCTCAATACAAGGCTGCTGGAGCCTGGAGACAATAGACTTGGACTATAACAATCTGACTGGAAGCATTCCTGCTGTACTAGGCCAAATGACAAACTTGACATACCTTTGTCTCTCTGAGAACAGCCTCACTGGAGCTATACCATCGTTTCTTTCGAATCTGACAAAGCTGACAGATTTAGAATTGCAAGTTAATTACTTCACAGGAAGGATTCCAGAGGAGCTAGGAGCATTAACAAAGCTGGAGATATTGTACCTCCACATCAACTTTTTGGAAGGAAGCATACCTGCATCCATCAGTAATTGCACTGCCCTGCGTCACATTACACTGATTGAGAATCGGTTAACGGGAACAATCCCTTTCGAATTGGGGTCAAAGCTCCATAACTTGCAGAGATTGTACTTCCAAGAAAACCAACTTTCTGGGAAAATTCCAGTGACCCTGTCCAATCTTTCTCAGCTGACACTGCTTGATCTTAGCCTCAACCAGTTAGAGGGGGAAGTCCCTCCTGAGTTGGGGAAGTTGAAGAAACTTGAGAGACTTTACCTTCATAGCAATAACCTGGTGAGCGGTTCCAACAACTCTTCCCTCAGTTTTCTAACTCCTCTCACTAATTGTTCACGTCTACAGAAACTGCACTTAGGGGCATGTCTGTTTGCAGGAAGTTTACCGGCTTCAATTGGCAGTCTTTCCAAAGATCTCTACTACTTGAATCTTCGAAACAACAAATTAACAGGAGACCTACCAGCTGAAATTGGAAATCTAAGCGGCCTTGTGACTCTAGACCTGTGGTATAATTTTTTGAATGGAGTTCCTGCAACAATTGGGAAGCTTAGGCAGTTGCAGAGATTACACTTGGGAAGAAACAAACTTCTTGGGCCAATTCCAGATGAACTTGGGCAGATGGCTAACCTTGGTTTACTGGAACTTAGTGATAATTTGATTAGTGGGACAATCCCATCTTCTCTTGGTAATCTGTCACAGTTGAGATATCTTTACTTGTCTCACAACCACCTCACAGGGAAAATTCCCATCGAACTCACCCAATGTTCTCTTCTAATGCTTCTTGATTTGTCTTTTAACAACTTACAAGGGTCTCTTCCCACAGAAATTGGTCATTTCTCAAACCTGGCTCTTTCACTCAACCTTTCGAACAACAATCTTGAAGGAGAACTACCTGCTAGTATTGGAAATCTGGCATCTGTGCTGGCAATTGACTTGTCAGCGAATAAATTCTTCGGAGTGATACCAAGTTCGATTGGAAGATGCATTTCAATGGAGTATCTGAACCTCTCTCACAACATGCTTGAAGGTACAATCCCAGAGTCCCTGAAGCAAATCATTGATCTAGGATATCTGGACTTGGCTTTCAATAATTTAACAGGAAATGTTCCAATCTGGATTGGTGACAGCCAGAAGATCAAGAATCTCAATTTATCGTATAACAGATTAACAGGAGAGGTTCCAAATAGTGGGAGGTATAAAAATCTAGGAAGCAGCTCATTCATGGGGAATATGGGGCTCTGTGGTGGCACCAAACTTATGGGTCTCCATCCATGTGAAATTCTGAAACAAAAGCACAAGAAAAGGAAATGGATTTATTACCTGTTTGCAATATTAACTTGTTCTCTGCTTCTCTTTGTGCTGATCGCCCTCACTGTTCGTCGTTTCTTCTTCAAAAATAGGAGTGCAGGTGCGGAGACTGCAATTCTAATGTATTCCCCAACCCATCATGGAACCCAAACTTTAACTGAAAGGGAAATCGAAATTGCTACTGGCGGTTTTGATGAGGCTAATCTATTAGGGGAAGGAAGTTTTGGTAGGGTGTATAAAGCTATCATCAATGATGGAAAAACTGTTGTGGCAGTTAAGGTTCTGCAAGAAGAGCGTGTTCAGGGTTACAGAAGTTTTAAAAGGGAGTGTCAAATACTGTCTGAAATTAGACATAGGAATCTGGTTAGAATGATAGGATCGACCTGGAATTCAGGATTCAAGGCTATTGTTCTCGAGTATATAGGCAATGGGAACTTGGAACAGCATCTTTACCCTGGTGGGTCAGATGAAGGAGGTAGTGAATTAAAATTGAGGGAAAGAATGGGAATAGCAATAGATGTTGCAAATGGCTTGGAGTATCTTCATGAGGGTTGTCCTGTTCAAGTTGTACACTGTGACCTGAAACCACAAAATGTTCTTTTGGACAATGATATGGTGGCTCATGTAGGAGATTCTGGTATTGGAAAGCTCATTTCAGGTGACAAACCAAGAGGACATGTTACTACCACAACTGCTTTTCTACGAGGATCTGTCGGGTATATCCCCCCAGAATATGGGCAGGGGATCGATGTCTCAACAAGAGGAGATGTATACAGTTTTGGAGTGATGATGTTAGAGATGATAACACGGAAGAGACCAACGAATGAAATGTTTTCAGATGGACTTGATCTAAGGAAATGGGTGTGTTCTGCTTTTCCAAATCAAGTTTTGGATATTGTAGACATCTCACTGAAGCACGAAGCATATTTGGAAGAGGGGAGTGGTGCTTTACATAAGCTTGAGCAATGCTGTATCCACATGCTCGATGCAGGGATGATGTGCACAGAAGAGAACCCCCAAAAGCGTCCCCTTATCTCTTCGGTTGCTCAAAGGCTAAAGAATGTCTGGAAAGAAATGGGATTTGAAACACTTCGTAAGGCAAAGGAAGAAAATGTGGACATGTCACTGAACTTAAAATAG 3159 0.4232 MAYNQNNPVAVAVFFSLSCLALLSTSTFLCKNSTDCQSLLKFKQGITGDPDGHLQDWNETRFFCNWTGITCHQQLKNRVIAIELINMRLQGVISPYISNLSHLTTLSLQANSLYGEIPATIGELSELTFINMSGNKLGGNIPASIQGCWSLETIDLDYNNLTGSIPAVLGQMTNLTYLCLSENSLTGAIPSFLSNLTKLTDLELQVNYFTGRIPEELGALTKLEILYLHINFLEGSIPASISNCTALRHITLIENRLTGTIPFELGSKLHNLQRLYFQENQLSGKIPVTLSNLSQLTLLDLSLNQLEGEVPPELGKLKKLERLYLHSNNLVSGSNNSSLSFLTPLTNCSRLQKLHLGACLFAGSLPASIGSLSKDLYYLNLRNNKLTGDLPAEIGNLSGLVTLDLWYNFLNGVPATIGKLRQLQRLHLGRNKLLGPIPDELGQMANLGLLELSDNLISGTIPSSLGNLSQLRYLYLSHNHLTGKIPIELTQCSLLMLLDLSFNNLQGSLPTEIGHFSNLALSLNLSNNNLEGELPASIGNLASVLAIDLSANKFFGVIPSSIGRCISMEYLNLSHNMLEGTIPESLKQIIDLGYLDLAFNNLTGNVPIWIGDSQKIKNLNLSYNRLTGEVPNSGRYKNLGSSSFMGNMGLCGGTKLMGLHPCEILKQKHKKRKWIYYLFAILTCSLLLFVLIALTVRRFFFKNRSAGAETAILMYSPTHHGTQTLTEREIEIATGGFDEANLLGEGSFGRVYKAIINDGKTVVAVKVLQEERVQGYRSFKRECQILSEIRHRNLVRMIGSTWNSGFKAIVLEYIGNGNLEQHLYPGGSDEGGSELKLRERMGIAIDVANGLEYLHEGCPVQVVHCDLKPQNVLLDNDMVAHVGDSGIGKLISGDKPRGHVTTTTAFLRGSVGYIPPEYGQGIDVSTRGDVYSFGVMMLEMITRKRPTNEMFSDGLDLRKWVCSAFPNQVLDIVDISLKHEAYLEEGSGALHKLEQCCIHMLDAGMMCTEENPQKRPLISSVAQRLKNVWKEMGFETLRKAKEENVDMSLNLK* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0324 1052 SMART LRR_typ_2 420 444 IPR003591 -
Vvi14g0324 1052 SMART LRR_typ_2 100 124 IPR003591 -
Vvi14g0324 1052 SMART LRR_typ_2 397 419 IPR003591 -
Vvi14g0324 1052 SMART LRR_typ_2 172 196 IPR003591 -
Vvi14g0324 1052 SMART LRR_typ_2 293 316 IPR003591 -
Vvi14g0324 1052 SMART LRR_typ_2 269 292 IPR003591 -
Vvi14g0324 1052 SMART LRR_typ_2 317 340 IPR003591 -
Vvi14g0324 1052 SMART LRR_typ_2 468 492 IPR003591 -
Vvi14g0324 1052 SMART LRR_typ_2 220 244 IPR003591 -
Vvi14g0324 1052 Gene3D Transferase(Phosphotransferase) domain 1 814 1049 - -
Vvi14g0324 1052 ProSitePatterns Serine/Threonine protein kinases active-site signature. 862 874 IPR008271 GO:0004672|GO:0006468
Vvi14g0324 1052 SUPERFAMILY Protein kinase-like (PK-like) 716 1025 IPR011009 -
Vvi14g0324 1052 CDD STKc_IRAK 743 1027 - -
Vvi14g0324 1052 Pfam Protein tyrosine and serine/threonine kinase 741 1025 IPR001245 GO:0004672|GO:0006468
Vvi14g0324 1052 SUPERFAMILY L domain-like 62 355 - -
Vvi14g0324 1052 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Vvi14g0324 1052 FunFam LRR receptor-like serine/threonine-protein kinase EFR 402 668 - -
Vvi14g0324 1052 Gene3D Ribonuclease Inhibitor 87 332 IPR032675 -
Vvi14g0324 1052 Gene3D Ribonuclease Inhibitor 26 86 IPR032675 -
Vvi14g0324 1052 ProSiteProfiles Leucine-rich repeat profile. 319 340 IPR001611 GO:0005515
Vvi14g0324 1052 SMART serkin_6 737 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0324 1052 FunFam LRR receptor-like serine/threonine-protein kinase EFR 32 318 - -
Vvi14g0324 1052 ProSiteProfiles Protein kinase domain profile. 737 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0324 1052 Gene3D Ribonuclease Inhibitor 333 671 IPR032675 -
Vvi14g0324 1052 SMART LRR_sd22_2 172 198 - -
Vvi14g0324 1052 SMART LRR_sd22_2 444 470 - -
Vvi14g0324 1052 SMART LRR_sd22_2 317 338 - -
Vvi14g0324 1052 SMART LRR_sd22_2 220 246 - -
Vvi14g0324 1052 SMART LRR_sd22_2 269 295 - -
Vvi14g0324 1052 SMART LRR_sd22_2 100 126 - -
Vvi14g0324 1052 Gene3D Phosphorylase Kinase; domain 1 722 813 - -
Vvi14g0324 1052 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 233 1024 - -
Vvi14g0324 1052 ProSitePatterns Protein kinases ATP-binding region signature. 743 766 IPR017441 GO:0005524
Vvi14g0324 1052 Pfam Leucine rich repeat 421 481 IPR001611 GO:0005515
Vvi14g0324 1052 Pfam Leucine rich repeat 150 207 IPR001611 GO:0005515
Vvi14g0324 1052 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 814 1038 - -
Vvi14g0324 1052 SUPERFAMILY L domain-like 336 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0324 Vvi-Chr14 3148999 3152738 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0324 22 1038 Receptor kinase-like Gene Family AT3G47570 38.454 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi14g0324 PK_Tyr_Ser-Thr 7.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0324 - - vvi:104881406 2039.23