Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0312 ATGCAAGACATTTTCGGATCAGTTCGCCGGTCGCTCGTCCTCCGGTCACCCGATGGCGACGACACTTCCCCCGGAACCCTAGTCGACAAAATCAACTCTTGCATTCGCAAATCCAGAGTCTTCTCCAGAGCCTCCCCTCCGCCACTAATTCCCAAAGACGCCACTGCGCCTTCGATCCGATGTCGAAAAGGGGAGCTGATCGGCTGTGGCGCCTTCGGTCGTGTCTATATGGGCATGAATCTCGATTCTGGAGAGCTTATCGCCGTCAAACAGGTTTTGATCACCACAAGCAATGCTACAAAAGAGAAGGCACAGGCTCATATTAGGGAACTTGAAGAAGAAGTGAAGCTTCTTAAGAATCTCTCTCATCCAAACATTGTTAGGTATTTGGGTATAGTCAGGGAGGAGGAGACCTTGAATATTTTGTTGGAATTTGTTCCTGGTGGATCCATCTCATCACTTTTGGGGAAATTTGGATCTTTCCCTGAGGCTGTGATAAGAATGTACACAAAACAATTATTATTGGGACTAGATTATCTTCACAACAATGGAATTATGCACAGGGACATCAAGGGGGCAAACATCCTCGTCGATAATAAAGGATGCATTAAACTTGCAGATTTTGGTGCTTCCAAGCAGGTTGTGGAGCTGGCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTTCTCGGCTGATATATGGAGTGTTGGATGTACCGTTATTGAGATGGCCACTGGAAAGCCTCCTTGGAGCCAAAAGTACCAAGAGGTTGCTGCTCTCTTTTATATTGGGACAACAAAGTCTCATCCGCCAATTCCTGCACATCTCTCTGCTGAGGCAAAAGATTTTCTACTGAAGTGTTTACAAAAGGAACCAGATTTGAGGCCAGCTGCCTATGAGTTGCTGAAGCATCCATTTGTTACTGGAGAGTATAACGAAGCTCAACTTGCTCTTCAAACTTCCGTTATGGAAAATTCTGAAACTCCTGTATCAACTTCTGAGGAAAACTTGCCAAATCCTCAAATGACAAATGACTCTAGCTTGCTGGATGTCTGTGAGATGGGGAATTTGAGCTGCTCAACTGGATATCCTGAGAATTCAGAATCCAAACCTAATTGGGGAACAAGCAGCAGTATTGACATGTGTCAAATTGATGACAAAGATGATGTTATGATGGTTGGGGAAGTAAAGTTCAATTCTATCCTGCTGCCTGATAACTTTAATAAGAGTTTCAATCCGATTTCTGAGCCCTCACATGATTGGAGCTGTGAAATTGATGGAAATCTACGACCAGAACATAGTGGAATGGACATGGACACCAATCCATCTCTTGATATGCCTGCTGGTAGCTCTGGCATATCCAATAAGGGAGGCAATGATTTCTCATTTCCTTGTGGGCCATCAGTATCTGAGGATGATGATGAAGTTACTGAGTCAAAAATCAGAGACTTCCTGGATGAGAAGGCCATTGAACTGAAGAAACTGCAAACGCCATTATATGAGGAGTTCTACAACACTTTGAATGCTGCATGCTCTCCAAGTGTTGCTGAGCGTACACAGGATGAAAATGTTATAAACTACTTGAAATTGCCTCCTAAAAGCCGTTCACCAAGTCGGGCTCCAATTGGAACCCCATCTGCGGCTGTTGATTCCACTAGTACTGCGAGCCCTGGGAGTTGTGGCAGACGAATGTCAAATGTTGGCAATGCAGGTGATCAAACTGCACAGGACACCCCGTCACCTCCACATAATGACTGGAAAGGCCTTCTTGTTGATTCTCAGCAGGAACCTAATAGCCCAAGTGTGAGCTTTTATGAGATACAGAGGAAGTGGAAGGAGGAGCTTGACCAAGAACTAGAGAGAAAACGAGAGATGATGCGCCAAGCAGGGAAAACATCATCACCAAAGGATCGAGCTTTGAATCGGCCAAGAGAACGTTCAAGGTTTGCATCTCCAGGCAAATGA 2013 0.454 MQDIFGSVRRSLVLRSPDGDDTSPGTLVDKINSCIRKSRVFSRASPPPLIPKDATAPSIRCRKGELIGCGAFGRVYMGMNLDSGELIAVKQVLITTSNATKEKAQAHIRELEEEVKLLKNLSHPNIVRYLGIVREEETLNILLEFVPGGSISSLLGKFGSFPEAVIRMYTKQLLLGLDYLHNNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQKYQEVAALFYIGTTKSHPPIPAHLSAEAKDFLLKCLQKEPDLRPAAYELLKHPFVTGEYNEAQLALQTSVMENSETPVSTSEENLPNPQMTNDSSLLDVCEMGNLSCSTGYPENSESKPNWGTSSSIDMCQIDDKDDVMMVGEVKFNSILLPDNFNKSFNPISEPSHDWSCEIDGNLRPEHSGMDMDTNPSLDMPAGSSGISNKGGNDFSFPCGPSVSEDDDEVTESKIRDFLDEKAIELKKLQTPLYEEFYNTLNAACSPSVAERTQDENVINYLKLPPKSRSPSRAPIGTPSAAVDSTSTASPGSCGRRMSNVGNAGDQTAQDTPSPPHNDWKGLLVDSQQEPNSPSVSFYEIQRKWKEELDQELERKREMMRQAGKTSSPKDRALNRPRERSRFASPGK* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0312 670 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Vvi14g0312 670 Coils Coil 94 121 - -
Vvi14g0312 670 SUPERFAMILY Protein kinase-like (PK-like) 63 360 IPR011009 -
Vvi14g0312 670 MobiDBLite consensus disorder prediction 636 670 - -
Vvi14g0312 670 MobiDBLite consensus disorder prediction 607 621 - -
Vvi14g0312 670 Pfam Protein kinase domain 63 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0312 670 Coils Coil 624 648 - -
Vvi14g0312 670 MobiDBLite consensus disorder prediction 555 597 - -
Vvi14g0312 670 MobiDBLite consensus disorder prediction 545 621 - -
Vvi14g0312 670 Gene3D Transferase(Phosphotransferase) domain 1 60 362 - -
Vvi14g0312 670 ProSiteProfiles Protein kinase domain profile. 61 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0312 670 SMART serkin_6 61 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0312 670 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 47 336 - -
Vvi14g0312 670 CDD STKc_MAPKKK 62 323 - -
Vvi14g0312 670 FunFam Mitogen-activated protein kinase kinase kinase 2 60 352 - -
Vvi14g0312 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0312 Vvi-Chr14 3063727 3072100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0312 1 670 MAP Kinase Kinase Kinase AT1G54960 57.431 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi14g0312 Pkinase 7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0312 K20606 - vvi:100254531 1346.64