Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0294 ATGGATCATCAAGGGCATGGACAAACCCCAGTAATGGGAATGGCTGGTAGTGCAGCTCAGTTGCCATATGGGACAAACCCTTATCAACATAACCAAATGGGTGGAACCCCTACTTCCGGATCAGTAGTGACATCAGTTGGGACCATTCAGTCTCCAGGGCATCCAGCAGGGGCTCAGCTTGCACAACACCAGCTTGCTTATCAGCATATGCACCACCAGCAGCAACAGCAGCTACAGCAACAACTCCAGTCTTTCTGGGCAAATCAGCATCAAGAAATCGAGAAGGCTACTGATTTTAAGAACCATAGCCTTCCCTTGGCAAGAATCAAGAAGATCATGAAGGCAGACGAGGATGTAAGGATGATATCAGCCGAGGCACCAGTGGTATTTGCTAGGGCATGTGAAATGTTCATTTTGGAGTTAACTTTGCGCTCTTGGAATCACACAGAAGAAAACAAAAGGAGGACTCTGCAAAAGAACGATATTGCTGCAGCTATCACAAGGACTGATATCTTTGACTTTTTGGTTGACATTGTGCCAAGAGAGGATCTCAAAGATGAAGTACTCACGTCAATCCCAAGAGGAACCATGCCAGTTGGGGGGGCCTCTGACACAGTCCCTTACTACTATATGCCTGCTCAACACTCGCCTCAGGTTGGCACGCCTGGGATGATCATGGGCAAGCCTGTTATGGATCCTGCTTTATATGCCCAACAGCCTCACCCCTACATGGGTCAATCAATGTGGCAATCACAGGCACCACAGCAAGAGCATTCACCCTCAGATTCTTAG 792 0.4811 MDHQGHGQTPVMGMAGSAAQLPYGTNPYQHNQMGGTPTSGSVVTSVGTIQSPGHPAGAQLAQHQLAYQHMHHQQQQQLQQQLQSFWANQHQEIEKATDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGTMPVGGASDTVPYYYMPAQHSPQVGTPGMIMGKPVMDPALYAQQPHPYMGQSMWQSQAPQQEHSPSDS* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0294 263 MobiDBLite consensus disorder prediction 22 56 - -
Vvi14g0294 263 Pfam Core histone H2A/H2B/H3/H4 64 166 IPR007125 GO:0003677
Vvi14g0294 263 SUPERFAMILY Histone-fold 69 175 IPR009072 GO:0046982
Vvi14g0294 263 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Vvi14g0294 263 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 212 - -
Vvi14g0294 263 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Vvi14g0294 263 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0294 Vvi-Chr14 2919101 2919892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0294 1 249 CCAAT-HAP5 Transcription Factor Family AT1G08970 64.000 2.80e-95 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vvi14g0294 CBFD_NFYB_HMF 4.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0294 K08066 - vvi:100258035 493.426