Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi14g0287 | ATGGGTATTTCATTGAGTAAATTCAGAAGGCATCGCCACCATCGCCGCCACAACCGACACCAAGCACAGCCACAGGAACGGCTGCAGCAGCCAATTGCTGCTGCGTCTTCTTCTTCTCTTGAAACCCCACCTCTGCAGCCAACTCCGCCACCTTGTCTTCCGTCAACATCGCAACCAACTCCGTCACCTTGTCTTCCATCACCATCGCCATCAACTCCGTCAGCTTCTCTTCCACCGCCATCACCACCTACTCCGCCTTCCCTTCCCCCGCCGTCGCCGCCAACGCCGCCACCGTTTCTTCCATCGCCATCATCAACTCCTCCACCACCGCGTCCATCGTCTCAGCCGTCGTTTGTTTTTGCGGCGAATGCGCCTTTCCCATCGACTACACAAGGGCCTTATGCGGGTTTGCCTTCTCCTTCGGCTCCAGCGCAGCTTTCTTCGAATTATGGTTCGCCCATGACGATGGATGGATTCGGTTTCTCTCAATTTCCGGCCAATTTTAATCGTGGTTATTCCGGGTGGGGCGGGTATGTCCCGACACCGCCGCCGCTGCCGTCGCCATCGCCACCGCCATACGTGGATCACATGAGTGCCAGGAAGATCAAGAATGATGTGAATGTTCACAAGGATACTATAAGGGTTGATTGGGATGAGAAGAATTTGGACTCCCATTTGGTTTCTTTCACTTTTGATGCTCTGGTCGACGGCAGCATCACCATTTTTTACTTTGCCAAGGAAGGAAATAATTGTTCCTTCACTCCTTTATATCCCGAGATATACATGCCGATTAGAATTCCATTCCAAAATGGGTTGGGTCAAAAGTTCTGTCAGCGCTCAGGAACTGGCATTGACCTGGGCTTCTTTGCCCTAGATGACTTATCAAGGCCATCACAGAACGAAGAGGTGTTCCCACTGGTTATCTATGCAGAATCAAGTCTGCCATCACTTCCGCCAATGCATGAGCAGCTTGGTCAGCCTCCGCCTATCGCTCCTTCCCGTGCACAGATTACTCAAGCTGTGCTGGAGAAGAATAATGAGGGCCATTTCCAAGTGAAAGTCATCAAGCAGATCTTGTGGGTCGATGGAGTTCGCTATGAGCTACGTGAGCTCTATGGCATTGAAAATTCTGATGAAAGGGGTATTGGCAACAATGACACAGGGAAAGAATGTGTTATTTGCATGACGGAGCCAAATGATACTGTTGTTCTACCTTGTCGTCATGTGTGTTTATGCAGTGAATGTGCAAAGCAGCTAAGGCTTCAGTCAAATAAGTGTCCCGTATGTCGCCACCCCATCCAGGAACTCATAGTGATTGTCCATAAAGAACAATCCTAA | 1338 | 0.5022 | MGISLSKFRRHRHHRRHNRHQAQPQERLQQPIAAASSSSLETPPLQPTPPPCLPSTSQPTPSPCLPSPSPSTPSASLPPPSPPTPPSLPPPSPPTPPPFLPSPSSTPPPPRPSSQPSFVFAANAPFPSTTQGPYAGLPSPSAPAQLSSNYGSPMTMDGFGFSQFPANFNRGYSGWGGYVPTPPPLPSPSPPPYVDHMSARKIKNDVNVHKDTIRVDWDEKNLDSHLVSFTFDALVDGSITIFYFAKEGNNCSFTPLYPEIYMPIRIPFQNGLGQKFCQRSGTGIDLGFFALDDLSRPSQNEEVFPLVIYAESSLPSLPPMHEQLGQPPPIAPSRAQITQAVLEKNNEGHFQVKVIKQILWVDGVRYELRELYGIENSDERGIGNNDTGKECVICMTEPNDTVVLPCRHVCLCSECAKQLRLQSNKCPVCRHPIQELIVIVHKEQS* | 446 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi14g0287 | 445 | ProSiteProfiles | Zinc finger RING-type profile. | 391 | 430 | IPR001841 | - | |
Vvi14g0287 | 445 | MobiDBLite | consensus disorder prediction | 24 | 42 | - | - | |
Vvi14g0287 | 445 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 373 | 440 | IPR013083 | - | |
Vvi14g0287 | 445 | MobiDBLite | consensus disorder prediction | 1 | 125 | - | - | |
Vvi14g0287 | 445 | PRINTS | Proline rich extensin signature | 73 | 94 | - | - | |
Vvi14g0287 | 445 | PRINTS | Proline rich extensin signature | 35 | 51 | - | - | |
Vvi14g0287 | 445 | PRINTS | Proline rich extensin signature | 59 | 71 | - | - | |
Vvi14g0287 | 445 | PRINTS | Proline rich extensin signature | 94 | 110 | - | - | |
Vvi14g0287 | 445 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Vvi14g0287 | 445 | PANTHER | MAHOGUNIN | 115 | 441 | IPR045194 | GO:0061630 | |
Vvi14g0287 | 445 | SMART | ring_2 | 391 | 429 | IPR001841 | - | |
Vvi14g0287 | 445 | SUPERFAMILY | RING/U-box | 390 | 436 | - | - | |
Vvi14g0287 | 445 | CDD | mRING-HC-C3HC5_MGRN1-like | 389 | 430 | IPR045195 | - | |
Vvi14g0287 | 445 | MobiDBLite | consensus disorder prediction | 43 | 115 | - | - | |
Vvi14g0287 | 445 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 375 | 440 | - | - | |
Vvi14g0287 | 445 | Pfam | Zinc finger, C3HC4 type (RING finger) | 389 | 435 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi14g0287 | Vvi-Chr14 | 2856657 | 2863852 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi14g0287 | 193 | 439 | C3H Transcription Factor Family | AT3G06140 | 57.258 | 1.48e-95 | 290 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi14g0287 | - | - | vvi:100852866 | 676.011 |