Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0287 ATGGGTATTTCATTGAGTAAATTCAGAAGGCATCGCCACCATCGCCGCCACAACCGACACCAAGCACAGCCACAGGAACGGCTGCAGCAGCCAATTGCTGCTGCGTCTTCTTCTTCTCTTGAAACCCCACCTCTGCAGCCAACTCCGCCACCTTGTCTTCCGTCAACATCGCAACCAACTCCGTCACCTTGTCTTCCATCACCATCGCCATCAACTCCGTCAGCTTCTCTTCCACCGCCATCACCACCTACTCCGCCTTCCCTTCCCCCGCCGTCGCCGCCAACGCCGCCACCGTTTCTTCCATCGCCATCATCAACTCCTCCACCACCGCGTCCATCGTCTCAGCCGTCGTTTGTTTTTGCGGCGAATGCGCCTTTCCCATCGACTACACAAGGGCCTTATGCGGGTTTGCCTTCTCCTTCGGCTCCAGCGCAGCTTTCTTCGAATTATGGTTCGCCCATGACGATGGATGGATTCGGTTTCTCTCAATTTCCGGCCAATTTTAATCGTGGTTATTCCGGGTGGGGCGGGTATGTCCCGACACCGCCGCCGCTGCCGTCGCCATCGCCACCGCCATACGTGGATCACATGAGTGCCAGGAAGATCAAGAATGATGTGAATGTTCACAAGGATACTATAAGGGTTGATTGGGATGAGAAGAATTTGGACTCCCATTTGGTTTCTTTCACTTTTGATGCTCTGGTCGACGGCAGCATCACCATTTTTTACTTTGCCAAGGAAGGAAATAATTGTTCCTTCACTCCTTTATATCCCGAGATATACATGCCGATTAGAATTCCATTCCAAAATGGGTTGGGTCAAAAGTTCTGTCAGCGCTCAGGAACTGGCATTGACCTGGGCTTCTTTGCCCTAGATGACTTATCAAGGCCATCACAGAACGAAGAGGTGTTCCCACTGGTTATCTATGCAGAATCAAGTCTGCCATCACTTCCGCCAATGCATGAGCAGCTTGGTCAGCCTCCGCCTATCGCTCCTTCCCGTGCACAGATTACTCAAGCTGTGCTGGAGAAGAATAATGAGGGCCATTTCCAAGTGAAAGTCATCAAGCAGATCTTGTGGGTCGATGGAGTTCGCTATGAGCTACGTGAGCTCTATGGCATTGAAAATTCTGATGAAAGGGGTATTGGCAACAATGACACAGGGAAAGAATGTGTTATTTGCATGACGGAGCCAAATGATACTGTTGTTCTACCTTGTCGTCATGTGTGTTTATGCAGTGAATGTGCAAAGCAGCTAAGGCTTCAGTCAAATAAGTGTCCCGTATGTCGCCACCCCATCCAGGAACTCATAGTGATTGTCCATAAAGAACAATCCTAA 1338 0.5022 MGISLSKFRRHRHHRRHNRHQAQPQERLQQPIAAASSSSLETPPLQPTPPPCLPSTSQPTPSPCLPSPSPSTPSASLPPPSPPTPPSLPPPSPPTPPPFLPSPSSTPPPPRPSSQPSFVFAANAPFPSTTQGPYAGLPSPSAPAQLSSNYGSPMTMDGFGFSQFPANFNRGYSGWGGYVPTPPPLPSPSPPPYVDHMSARKIKNDVNVHKDTIRVDWDEKNLDSHLVSFTFDALVDGSITIFYFAKEGNNCSFTPLYPEIYMPIRIPFQNGLGQKFCQRSGTGIDLGFFALDDLSRPSQNEEVFPLVIYAESSLPSLPPMHEQLGQPPPIAPSRAQITQAVLEKNNEGHFQVKVIKQILWVDGVRYELRELYGIENSDERGIGNNDTGKECVICMTEPNDTVVLPCRHVCLCSECAKQLRLQSNKCPVCRHPIQELIVIVHKEQS* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0287 445 ProSiteProfiles Zinc finger RING-type profile. 391 430 IPR001841 -
Vvi14g0287 445 MobiDBLite consensus disorder prediction 24 42 - -
Vvi14g0287 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 440 IPR013083 -
Vvi14g0287 445 MobiDBLite consensus disorder prediction 1 125 - -
Vvi14g0287 445 PRINTS Proline rich extensin signature 73 94 - -
Vvi14g0287 445 PRINTS Proline rich extensin signature 35 51 - -
Vvi14g0287 445 PRINTS Proline rich extensin signature 59 71 - -
Vvi14g0287 445 PRINTS Proline rich extensin signature 94 110 - -
Vvi14g0287 445 MobiDBLite consensus disorder prediction 1 21 - -
Vvi14g0287 445 PANTHER MAHOGUNIN 115 441 IPR045194 GO:0061630
Vvi14g0287 445 SMART ring_2 391 429 IPR001841 -
Vvi14g0287 445 SUPERFAMILY RING/U-box 390 436 - -
Vvi14g0287 445 CDD mRING-HC-C3HC5_MGRN1-like 389 430 IPR045195 -
Vvi14g0287 445 MobiDBLite consensus disorder prediction 43 115 - -
Vvi14g0287 445 FunFam probable E3 ubiquitin-protein ligase LOG2 375 440 - -
Vvi14g0287 445 Pfam Zinc finger, C3HC4 type (RING finger) 389 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0287 Vvi-Chr14 2856657 2863852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0287 193 439 C3H Transcription Factor Family AT3G06140 57.258 1.48e-95 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0287 - - vvi:100852866 676.011