Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0283 ATGATCAGCGGTTCAGTTTCCCAGGCGAACAGGAATGGTGCCACTCTCGTTTGTGGGCTGCTTCGCTTTGGTGGCTTTTCTCAGCATGGCACGGTGTCTCTCTGGATTCTCTTGCTCTTGCTGCCTTTCGCCGGAGCTCAGTCCGACACGTCCAACGATCCGTACCAGCAGCAGCGGTTCAGTTCATCCATGGCAATTATTATCGTAATCCTTGTAGCTGCGCTCTTCTTGATGGGATTCTTCTCCGTATACATCCGTCACTGCTCCGACTCGCGTAACGGCGGGAGTATTCGCGCGGCCGCCGGAGCCGCTCTTGGTCGGTCGCGACGCGGTACGCGTGGTCTGGATCAGGCGGTGCTCGAAACATTTCCCACGTTTGAGTATTCTGTCGTGAAAGGGCTCAAGATCGGGAAAGGCGTGCTGGAGTGCGCCGTGTGCCTGAATGAGTTTGAGGATAATGAAACTCTGCGTTTGATTCCGAAGTGCGATCACGTGTTCCATCCGGAGTGCATCGATGCTTGGCTGGCTTCGCACGTTACGTGCCCGGTATGCCGCGCGAACCTGACTGAGCCGGCGGTGCCCACCGACTATTCCGCTGCTGTGGAAGCGGCGGAATCAGCCGGTGAATCCGATCATGACGGTGAGGATAGGAGATCGGAGATCAACGCTGTACGCGAGGTCTCGATTCGAGTGGCGGATGATGAAACTGATGTCCAACAAGCGCCTGATGTGATAAACCCAAACCAATCGCTGCACCAGAACCGACCTCCGAGATCGAAATCGACGCGGCCTCGAAAGTTTCCTCGGTCGCACTCTACCGGTCACTCGCTCATCCAACCAGGCGAGAACTGCGAGCGGTTCACTCTGAAGCTGCCGGAGGACGTGCGCAAACAGATAATGAAGCGAGCTCTAAACCGCACGACGAGTCTCTTGGTGTTGCCAAGGGATGGGAGCTCGCGGCAGGGATACCGAACCGCCGGCGAAGGAAGCAGCCGAGGAAAAAACTTCCGCCGTTTTGACCGTTTGGAGCGGTCGGGGAAGTCGGATCGGTGGACTTTCTCCATAACTCCGCCGTTCTTCTCCAGAGCATCGTCGTTAAAATCGCCGAAGGTGGCTGCCGACGGCGAGGCAACATCCTCAACTTCACCGCGCAAGCCTACATTGACTCCCAAGGCGTCTTTTGGTGCCAAACGCGATCCCGCCGGAACACCACCGGTCGGCTCCCCTCGACAACCTGTCGGCTCCCCGCGACCACCGGTTTAA 1263 0.5756 MISGSVSQANRNGATLVCGLLRFGGFSQHGTVSLWILLLLLPFAGAQSDTSNDPYQQQRFSSSMAIIIVILVAALFLMGFFSVYIRHCSDSRNGGSIRAAAGAALGRSRRGTRGLDQAVLETFPTFEYSVVKGLKIGKGVLECAVCLNEFEDNETLRLIPKCDHVFHPECIDAWLASHVTCPVCRANLTEPAVPTDYSAAVEAAESAGESDHDGEDRRSEINAVREVSIRVADDETDVQQAPDVINPNQSLHQNRPPRSKSTRPRKFPRSHSTGHSLIQPGENCERFTLKLPEDVRKQIMKRALNRTTSLLVLPRDGSSRQGYRTAGEGSSRGKNFRRFDRLERSGKSDRWTFSITPPFFSRASSLKSPKVAADGEATSSTSPRKPTLTPKASFGAKRDPAGTPPVGSPRQPVGSPRPPV* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0283 420 MobiDBLite consensus disorder prediction 206 237 - -
Vvi14g0283 420 MobiDBLite consensus disorder prediction 405 420 - -
Vvi14g0283 420 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Vvi14g0283 420 FunFam E3 ubiquitin-protein ligase ATL6 104 191 - -
Vvi14g0283 420 MobiDBLite consensus disorder prediction 313 335 - -
Vvi14g0283 420 MobiDBLite consensus disorder prediction 241 257 - -
Vvi14g0283 420 MobiDBLite consensus disorder prediction 361 420 - -
Vvi14g0283 420 SMART ring_2 143 184 IPR001841 -
Vvi14g0283 420 Pfam Ring finger domain 142 185 IPR001841 -
Vvi14g0283 420 CDD RING-H2_EL5-like 142 185 - -
Vvi14g0283 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 191 IPR013083 -
Vvi14g0283 420 PANTHER RING FINGER DOMAIN-CONTAINING 48 196 - -
Vvi14g0283 420 MobiDBLite consensus disorder prediction 202 281 - -
Vvi14g0283 420 MobiDBLite consensus disorder prediction 374 388 - -
Vvi14g0283 420 SUPERFAMILY RING/U-box 142 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0283 Vvi-Chr14 2814573 2815835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0283 30 383 Rapid Response to Elicitors AT3G05200 46.556 2.91e-93 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0283 K10664 - vvi:100242654 811.216