Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0282 ATGGCACTTGAAGCTGTGGTCTTTCAACAAGACCTGTTTGGTTATAATGGCAAAGATCTTTACAGCTTGTTTGGGGGGAACTGGAGCTGTGAATTTGGCCTTGAAAAGGAGGATGAGAAAAGTTGCTGCTTTGACACTCTTGAGAGCCAAACAGAAACAAGCCATCATTATGAGAATTGGAATTCTCCTTCTCAACCTCCTCCTCCTTCAATAGTGCCTCACTTGAACGAGTGGCACCATCACAATTCATCCCCAGAAGGCCTAATCCCAAAACAAGTTCCGGAATTTGATTCCACTCTTCCGACCGCCACATCATCTTCCTCTCGCCCCAAGAGACGCCGATCCAAGAGCAAAAAGAACCAAGAAGAAATCGAAAACCAGAGAATGACTCACATTGCAGTCGAGCGCAACCGCCGCAAGCAGATGAATGAGTATCTCTCCGTCCTCCGCTCATTGATGCCTGAATCCTATGTTCAAAGGGGTGATCAAGCGTCTATCATAGGAGGTGCGATCAACTTTGTCAAGGAGCTTGAGCAGCGCCTGCAGTGGCTCGGTGGTCAGAAAGAGAAGGAAAATGGCGAGGCTGGAAGTTCCGCACCCTTCTCTGAATTCTTCACTTTTCCACAGTACTCAACAAGCTCAACTGTGAGTGATAACTCGGTGTCCATGGCGGATACTGTGGGTGGAAACCAGGCGGTCATTGCTGACATTGAAGTGACCATGGTGGAGAGCCATGCCAACCTGAAAATAAGGTCGAGAAGGCGGCCGAAGCAGCTGCTGAGAATGGTGTCCGGATTGCAATCCCTGCACCTCACAATCCTCCACCTCAATGTCACAACCATTGATCAAACTGTGCTTTATTCTCTCAGTGTGAAGGTAGAAGATGACTGCAAGCTGACTTCAGTAGATGATATTGCCACTGCTGTGTATCAGATGCTAGGTAGGATTCAAGAAGAGGCTATGATAAATTGA 972 0.4774 MALEAVVFQQDLFGYNGKDLYSLFGGNWSCEFGLEKEDEKSCCFDTLESQTETSHHYENWNSPSQPPPPSIVPHLNEWHHHNSSPEGLIPKQVPEFDSTLPTATSSSSRPKRRRSKSKKNQEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQWLGGQKEKENGEAGSSAPFSEFFTFPQYSTSSTVSDNSVSMADTVGGNQAVIADIEVTMVESHANLKIRSRRRPKQLLRMVSGLQSLHLTILHLNVTTIDQTVLYSLSVKVEDDCKLTSVDDIATAVYQMLGRIQEEAMIN* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0282 323 Gene3D - 116 192 IPR036638 GO:0046983
Vvi14g0282 323 MobiDBLite consensus disorder prediction 54 130 - -
Vvi14g0282 323 CDD bHLH_AtFAMA_like 129 203 - -
Vvi14g0282 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 177 IPR011598 GO:0046983
Vvi14g0282 323 PANTHER MAX DIMERIZATION, MAD 31 320 - -
Vvi14g0282 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 192 IPR036638 GO:0046983
Vvi14g0282 323 SMART finulus 132 183 IPR011598 GO:0046983
Vvi14g0282 323 Pfam Helix-loop-helix DNA-binding domain 127 178 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0282 Vvi-Chr14 2775566 2776726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0282 117 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 60.847 1.72e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi14g0282 HLH 8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0282 - - vvi:100261443 611.298