Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0271 ATGGGGTTCTTGGATGCCATACCAAATAAGCATTCACTCCAAGATTCATCCTCCTTTCTCAACACTACTACTGTCATAGCCCTCTGTTTGTTCTTTGCTCTTCTTTGTGCTTGCATAGTCATTGGCCATCTTCTTGAGGAGCACAGATGGGCCAACGAGTCAATCACCGCGCTTCTTTTGGGGTTGTGCGCGGGTGTGGTGGTGCTGTTGGTGAGTAAAGGCCGTAGTTCGAAAATTCTTGCGTTCAATGAGGACTTGTTCTTCCTCTATTTGCTTCCCCCAATCATTTTCAATGCTGGTTTCCAGGTAAAGAAGAAGCAATTTTTTAAGAATTTCTCAATAATATTGATGTTCGGAGTATTTGGTACCATAATATCCTTCTGCCTCATATCAGCAGGTGCCTTTCTTCTATTCAAAAAGATCGGCATTACAACCTTGAATATCGAAGACTACCTAGCTGTTGGCGCCATCTTGTCAGCAACGGATTCTGTTTGTACATTGCAGGTCCTCAATCAAGAAGAGACACCTTTCCTGTACAGTGTTGTATTCGGGGAGGGAGTGGTGAATGATGCTACTTCTATTGTGATTTATAATGCAGTTCAATCACTTGACTTAAGCAATATCGATGCTTTGACGGCCTTAAAATTGCTGGGGACCTTCCTTTACCTCTTTTTCACCAGTACTATCCTTGGTGTAGTGGCAGGTCTTTTGAGTGCCTACATCATAAAGACTCTTTATTTTGGAAGACATTCCACGGATCGTGAAGTTGCACTCATGATGATTATGGCTTATTTGTCATACATGTTGGCAGAGCTTTTATCTCTGAGTGGGATTTTAACAGTTTTCTTCTGTGGCATTGTCATGTCGCATTACACATGGCATAATGTTACCGAAAGCTCGCGAATAACAACCAAGCACGCATTTGCTACAATTTCCTTCATTGCAGAGACTTTTATATTTCTTTATGTCGGTATGGATGCCTTAGACATTGACAAATGGAGAAGCAGCAAAGCAAGTGCAGGAACTTCAGTTTCTGTCAGCTCGGCATTCCTAGCATTGGTGCTGATTGGAAGAGCAGCTTTCGTGTTCAGTCTTTCAAACATATTAAATTTCTTTAAAAGTGCAGAGAGCACAAAAGTTGAGTTCCGACAACAGTTTATAATATGGTGGGCAGGCCTAATGAGAGGTGCAGTTACCATTGCTCTGTCCTACAGCGAGTTCTCAGACTCTGAGACCACATCGACACAGGACTCTGCCCTAATGATCACCAGCACCATTATTGTTGTTCTTTTTAGTACAGTGGTTTTTGGTTCAATAACAAAGCCACTGATCGGAGCAGTGCTGCTAAGACATGCAAAACCAACAGTGTCTGATGCAACTGACATTGCAAGCCTGGAAGACTTGAGACTCCTATTCCTTGAAAATGGAGACCCCAGTGATGGTGGCAACAATCAACCAAGTCCAAAGGCAAGTAACTTGAGGCTGCTGATGAGATACCCAACATCAACAGCTCACTACTTCTGGAGAAAATTCGATGACAAATACATGAGACCGATGTTTGGTGGACGGGGTTTTGTTCCATATGTTCCTGGTTCACCAACTGGTGCACAAGATGAAACATCTTGA 1626 0.428 MGFLDAIPNKHSLQDSSSFLNTTTVIALCLFFALLCACIVIGHLLEEHRWANESITALLLGLCAGVVVLLVSKGRSSKILAFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFSIILMFGVFGTIISFCLISAGAFLLFKKIGITTLNIEDYLAVGAILSATDSVCTLQVLNQEETPFLYSVVFGEGVVNDATSIVIYNAVQSLDLSNIDALTALKLLGTFLYLFFTSTILGVVAGLLSAYIIKTLYFGRHSTDREVALMMIMAYLSYMLAELLSLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVGMDALDIDKWRSSKASAGTSVSVSSAFLALVLIGRAAFVFSLSNILNFFKSAESTKVEFRQQFIIWWAGLMRGAVTIALSYSEFSDSETTSTQDSALMITSTIIVVLFSTVVFGSITKPLIGAVLLRHAKPTVSDATDIASLEDLRLLFLENGDPSDGGNNQPSPKASNLRLLMRYPTSTAHYFWRKFDDKYMRPMFGGRGFVPYVPGSPTGAQDETS* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0271 541 PANTHER SODIUM/HYDROGEN EXCHANGER 21 520 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vvi14g0271 541 Pfam Sodium/hydrogen exchanger family 30 443 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vvi14g0271 541 Gene3D - 147 199 - -
Vvi14g0271 541 PRINTS Na+/H+ exchanger signature 115 123 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vvi14g0271 541 PRINTS Na+/H+ exchanger signature 155 165 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vvi14g0271 541 PRINTS Na+/H+ exchanger signature 100 114 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vvi14g0271 541 PRINTS Na+/H+ exchanger signature 86 97 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vvi14g0271 541 NCBIfam sodium/hydrogen exchanger 3 27 453 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0271 Vvi-Chr14 2600666 2606953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0271 21 534 Antiporters AT3G05030 63.916 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0271 K14724 - vvi:100264772 1006.13