Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0259 ATGGTTGATGAGCAGGATCATTTGCTGCCTATTGCCAACGTGGGCCGGATCATGAAGCAAATCCTGCCACCAAGAGCCAAGATCTCCAAAGAAGGCAAAGAAACAATGCAAGAGTGTGCATCTGAGTTCATAAGTTTTGTTACTGGTGAAGCATCTGACAAGTGTCACAAAGAGAACCGCAAGACGGTGAACGGAGATGACATTTGTTGGGCTCTGAGTGCACTAGGATTTGATGACTATGCTGAGGCTATATTAAGGTACTTACATAAATATAGGGAGTTTGAAAGAGAGAGAGCCAACCAAAACAAAGTTGGTGGCAGTGAAGACAAAGATGAAGCATCAAACTGTAAATATATCCAAGCTGGGAAGCAAACTGTAATTCCTCCTCCATTAGAGTGCAGAGTTATCAAGAAGGGTAATAGCTCTCTTACAAAGCCATCTTAA 444 0.4257 MVDEQDHLLPIANVGRIMKQILPPRAKISKEGKETMQECASEFISFVTGEASDKCHKENRKTVNGDDICWALSALGFDDYAEAILRYLHKYREFERERANQNKVGGSEDKDEASNCKYIQAGKQTVIPPPLECRVIKKGNSSLTKPS* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0259 147 SUPERFAMILY Histone-fold 5 113 IPR009072 GO:0046982
Vvi14g0259 147 ProSitePatterns NF-YB/HAP3 subunit signature. 39 55 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi14g0259 147 Gene3D Histone, subunit A 1 126 IPR009072 GO:0046982
Vvi14g0259 147 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Vvi14g0259 147 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Vvi14g0259 147 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Vvi14g0259 147 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 109 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi14g0259 147 FunFam Nuclear transcription factor Y subunit B-6 1 113 - -
Vvi14g0259 147 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 72 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0259 Vvi-Chr14 2475206 2475649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0259 1 142 CCAAT-HAP3 Transcription Factor Family AT1G09030 60.563 3.50e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi14g0259 CBFD_NFYB_HMF 3.3e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0259 K08065 - vvi:100249483 302.753