Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0246 ATGCAAGTGTCGGAATACCCGTCGGTATTGACGGTTCTGATCCGTGAAATCCTGCCGGTGATGAAGTTCGGGGAGGTGGTTTGCAGTGGCGACGCGCCGGAGAGTTGCGTCGTATGTCTGTACGACTTCGAGGTAGGAGAAGAGATCAGGCGGTTGACCAATTGTAAAAACATTTTCCACCGGAGCTGTTTGGACCGTTGGATGGACCACGATCAGAAGACCTGTCCACTTTGTAGGACCCCATTTGTGCCTGATGAGATGCAAGATGAGTTCAATCAACGGCTCTGGGTTGCCTCTGGGATCACTGATTTTTACAGTGAATACGGTACCGTTTCAGGCTTGTAG 345 0.5101 MQVSEYPSVLTVLIREILPVMKFGEVVCSGDAPESCVVCLYDFEVGEEIRRLTNCKNIFHRSCLDRWMDHDQKTCPLCRTPFVPDEMQDEFNQRLWVASGITDFYSEYGTVSGL* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0246 114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 83 IPR013083 -
Vvi14g0246 114 Pfam Ring finger domain 35 79 IPR001841 -
Vvi14g0246 114 ProSiteProfiles Zinc finger RING-type profile. 36 79 IPR001841 -
Vvi14g0246 114 PANTHER RING ZINC FINGER PROTEIN-RELATED 18 97 - -
Vvi14g0246 114 SMART ring_2 36 78 IPR001841 -
Vvi14g0246 114 SUPERFAMILY RING/U-box 28 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0246 Vvi-Chr14 2278769 2279113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0246 7 100 C3H Transcription Factor Family AT1G63840 57.732 1.69e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0246 K16281 - vvi:100244721 226.483