Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0234 ATGTCAAACATAACAGCTGGGGATGGTGGGAGCTTCTCTTCTGGAACTAATGGTGGAGAAGAAGTTCAGCAGCAGCCTGTCAACAACCTCCATGGCTTAAGCTCATCAGTGCCTTCATCTACAAGTAACAACAGCAATGGCTCCATCTCTCAGCAGCAGCCTCCACCAGCCAAGAAGAAAAGGAATCTCCCAGGAAACCCAGACCCAAGTGCAGAAGTGATAGCTCTATCACCAACTACCCTAATGGCAACAAACAGGTTTGTGTGTGAGATTTGTAACAAAGGGTTCCAAAGAGATCAAAACCTTCAGTTACACAGGCGAGGGCATAATCTGCCATGGAAGCTGAGGCAAAGATCAAGCACAGAGATCAGGAAAAGGGTGTATGTATGCCCAGAACCCTCATGCGTTCACCATAACCCAGCTCGAGCACTAGGTGATCTTACAGGGATAAAGAAGCATTTCTGCAGAAAACATGGGGAGAAGAAATGGAAGTGTGACAAGTGCTCCAAGAAGTATGCAGTTCAGTCTGACTGGAAAGCCCACTCCAAGACCTGTGGCACCAGGGAGTATAAGTGTGACTGTGGCACTATCTTCTCCAGAAGAGATAGCTTCATCACTCATAGGGCTTTTTGTGATGCCCTAGCTGAAGAAAACACCAAAGTGAATCAAGGTCTAGCAAACACCATGAGACGCAACTTACAAATACAAGGCCAGGTCTCTGAGCTGTTGTCCTCCATGCCTCTAAACAACAACCCTAATTCAACAATGGGGTTGTCCGAGTTTACTCACTCTGATTCCAAAAACCATCTTAAAACCCTACCCCATGAGCCCATGCCTGTACCTCCAAAGCCCTTGAACATGGCAGCTGCTGGCATGTTCTCAACCACCTCTGGAAGCCTCTTTGGGTGCCCAATAACCGCTTCGTCTCCTTCGTCCTCGTCCCGCCTTCAGCTCAGTACTAATTCATCATCACCCAGCTTTGAAAATGGACAGCAACTACCGCCGCCGCCAGCGTCAACGCTCATGTCTGCAACGGCACTGCTGCAGAAAGCAGCCCAAATGGGAGCAACTGCAAGTACTAAAATGAATAACTCTCCACCAAAGGGCTTTGTGACAAGCATGGCTCCAACCCCATTTGGTGGGATACTTCTACAGAAGAACAGTAGCTCAAATGATCACCACCTCCAAGCTGATCCAACCCAGTTTCTAAACCAGTTTTTTTATCAGAATGATGGGGCTGAGAGTGAGGTGATGAGCGAAATGGGGATGTTCTCAGGACTGTTTGATCAAAACCATGGACTGTTCAAGAACATGGAGCATCATGAGCATAGCAACAGTAACAACATTTTGGCTGCTAAAACTACAAATCCAGGGTTAAGTAGCACTCCAAGAAATGGAAAAACTGATACGATGACAGTCGATTTCTTGGGGATCGGAGGAGCCCGGCCTGGGAATTTCCATGGACAGCAGCAGCAGCAGCAAGAAATGTTTGAAGGAATGAATATAAACCACCCAAGAATGCAAGGTTTTAGTAGCTTTGAGCAGCACATCGCACATGGGCAAGCAGCAATGGAGAAGACCATGTGGGAGGCTTGA 1596 0.4749 MSNITAGDGGSFSSGTNGGEEVQQQPVNNLHGLSSSVPSSTSNNSNGSISQQQPPPAKKKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENTKVNQGLANTMRRNLQIQGQVSELLSSMPLNNNPNSTMGLSEFTHSDSKNHLKTLPHEPMPVPPKPLNMAAAGMFSTTSGSLFGCPITASSPSSSSRLQLSTNSSSPSFENGQQLPPPPASTLMSATALLQKAAQMGATASTKMNNSPPKGFVTSMAPTPFGGILLQKNSSSNDHHLQADPTQFLNQFFYQNDGAESEVMSEMGMFSGLFDQNHGLFKNMEHHEHSNSNNILAAKTTNPGLSSTPRNGKTDTMTVDFLGIGGARPGNFHGQQQQQQEMFEGMNINHPRMQGFSSFEQHIAHGQAAMEKTMWEA* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0234 531 Gene3D Classic Zinc Finger 66 132 - -
Vvi14g0234 531 FunFam protein indeterminate-domain 5, chloroplastic-like 141 220 - -
Vvi14g0234 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Vvi14g0234 531 SMART c2h2final6 128 158 IPR013087 -
Vvi14g0234 531 SMART c2h2final6 163 183 IPR013087 -
Vvi14g0234 531 SMART c2h2final6 87 109 IPR013087 -
Vvi14g0234 531 MobiDBLite consensus disorder prediction 304 340 - -
Vvi14g0234 531 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 39 498 IPR031140 -
Vvi14g0234 531 Pfam Zinc finger, C2H2 type 87 109 IPR013087 -
Vvi14g0234 531 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Vvi14g0234 531 SUPERFAMILY beta-beta-alpha zinc fingers 86 183 IPR036236 -
Vvi14g0234 531 Gene3D Classic Zinc Finger 142 221 - -
Vvi14g0234 531 FunFam protein indeterminate-domain 12-like 66 134 - -
Vvi14g0234 531 MobiDBLite consensus disorder prediction 1 57 - -
Vvi14g0234 531 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0234 Vvi-Chr14 2059534 2062807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0234 35 359 IDZ Gene Family AT3G50700 57.726 2.45e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi14g0234 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0234 - - vvi:100263074 1031.17