Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0232 ATGGATCATCCTCGGTCAACATCTGGGAATGGTGAGGATAATGTTGGGATTCCAGAGGATTTGCGTTGCAAGAGGTCAGATGGGAAACAGTGGAGATGCAGTGCCATGTCCATGCCAGATAAAACAGTATGCGAAAAGCACTACATCCAGGCAAAGAAAAGAGCTGCAAATTCTGCATTGAGAGCTAGCCTGAAGAAAGCCAAGAGGAAGTCCCTAGGTGAAACTGATGTTTACTTGGAGAGCAAGAGTGATGATTTTGACATGCCGCTTGTCAACACAAAAGCTGCTGATTATCCTGTTTCGGTATCAGGAAATAAGTATAAGGAGAAGGTAACTAAGAAACAGGTACGCTATTCACCTGAAACACCTCCTGTTAGGAGTGTGTCCATACGCAGTTCTTTAAAGCCAAATGATGATTCACAAAGAGAGACACAGTTTGAAGAGAACAGGAGGTCTTATAGGACAACACCACTTTCTGTGATGGATTCCTCTAGGACCAAATCACAGAGGAGTTTGGATGATTACTCTGATGGAAGCACAGATTCTTCTGATGATGAAAATGGTGGGCAAACTTGCCATCAGTGTCGAAGGAACGATAGAGACAGAGTTATCTGGTGCCTTAGATGTGATAAGAGAGGATACTGTGATAGCTGCATCTCTACATGGTACTCAGATATCCCATTGGAAGAGATCCAGAAGATCTGTCCTGCATGTCGTGGTACTTGTAATTGTAAGGTTTGCTTACGTGGAGATAATTTGATAAAGGTAAGAATACGGGAGATTCCAGTCCAAGACAAGCTGCAATATCTCCACTCTTTACTATCTTCGGTGCTCCCGGAAGTTAAGCAGATCCACCATGAACAATGTGCTGAACTAGAACTGGATAAAAGGCTTCATGGAGCTAGCATAAAACTTGAGAGGCAAAGATTGAATAATGATGAACAGATGTGCTGCAATTTCTGTAGGGTACCTATTATTGATTACCACAGGCATTGTATGAATTGCTCGTATGACCTATGCCTTAATTGCTGTCAAGATCTTCGAGAAGCATCTATGCTTGGTACCAAAGGAGAAGCAGCAGAAAAAGAAACTTTGTCAGAACAAGTGAAACCAACCAAATTGAAATTAAATTTAGCAGATAAGTTTCCTGCTTGGAAAGGCAATGATGATGGCAGTATTCCATGCCCACCAAAGGATTATGGTGGCTGTGGTTTCTCATCATTAACTCTTACCCGCATTTTCAAGATGAATTGGGTTGCAAAGCTGGTAAAAAATGTGGAGGAGATGGTTACTGGCTGTAAGGTTTATGATATTAATAGTCCACAAAAAACCAGGTCAAGCAACAGGTTCTGCCAATCTGCACATAGAGAGGACAGTGATGATAATTTCTTATATTGTCCATCATCTCAAGATATCAAAACTGAAGGAATTGGAAATTTTCGAAAGCATTGGATCAGGGGAGAACCTGTTATTGTTAAGCAGGTGTGTGATGACTCGTCTATTTCAAACTGGGATCCATCGGTTATATGGAGAGGGATTAGAGAGACATCAGATGAGAAGACGAAAGATGATAACAGAACAGTCAAGGCCATAGACTGCTTAGACTGGTCTGAGGTTGATATTGAACTTGGTCAGTTTATCAAAGGATACTCAGAGGGGCGACTTCGTGATGACGGGTGGCCAGAAATGTTGAAGTTGAAGGATTGGCCATCCCCCAGTGCTTCTGAAGAGTTATTGTTATACCAGAGACCTGAATTTATCAGTAAAATGCCATTACTTGAGTACATCCATTCAAAGTGGGGCCTTTTAAATGTTGCAGCAAAACTGCCTCATTACTCCTTGCAGAATGATGTAGGGCCCAACATTTTTATTTCTTATGGGACCTATGAGGAACTTGGTAGCGGTGATTCAGTGACCAACCTCCATTTAGAAATGCGTGACATGGTTTACCTACTGGTACACACATCTGAGGTCAAACTAAAAGGTCGGCAGGAGGAGAAGATTGAAAAGGGGAAAGAGGCCTCTATGGAGTCTGAGGCAAAAGAATCACCTGGAGATGTACAAACAAGTTTGGATGAGGGAAGAACCCCTGATTTATCACTTGGTGGACATGATCAACAGGGGGATCATGGGGAAAAGTTAAACAACGATAAGGATGAGGAAATGGAGGACCAGGGGATTGATACTACCTCTAGTGTTGAAGCGAAAACTGTCAACTGTGAAAACCTGCACAGTGATAATGGTGATATCTCCCAAATCACTCATCCAGGAGCTCTTTGGGATGTTTTCCGTCGGCAGGATGTTCCAAAGCTGATTGAGTATTTGCAAATTCATTGGGAGGAATTTGGGAAGCCTACCAGTGCAACAACTGATTCTGTTCAACATCCTCTTTATGATGAAGCCATTTTTCTGAACAGGCATCATAAAACACAATTGAAAGAAGAATTTGGAGTTGAGCCTTGGTCATTTGAACAGCATTTGGGGCAAGCCATATTCATCCCTGCTGGTTGCCCTTTCCAATCGAGAAATCTTCAGTCTACAGTTCAGTTGGGCCTTGACTTTTTGTCGCCCGAGAGCCTAGGGGAGGCTGTGAGACTGGCTGATGAAATCCGATGTCTTCCAACTGAGCATGAGGCAAAGCGGCAAGTGTTGGAGGTAGGGAAGATATCACTATATGCAGCCAGTTCAGCTATTAAAGAAGTACAGAAGTTGGTTCTTGATCCAAAACTCGGCCCAGAGCTTGGTTTCGAGGATCCAAATTTAACTTCATTGGTTTCTGAGAACCTGGAGAAGATGATTAGACGAAGGCAGGTCACTTGTGCTTGA 2826 0.4278 MDHPRSTSGNGEDNVGIPEDLRCKRSDGKQWRCSAMSMPDKTVCEKHYIQAKKRAANSALRASLKKAKRKSLGETDVYLESKSDDFDMPLVNTKAADYPVSVSGNKYKEKVTKKQVRYSPETPPVRSVSIRSSLKPNDDSQRETQFEENRRSYRTTPLSVMDSSRTKSQRSLDDYSDGSTDSSDDENGGQTCHQCRRNDRDRVIWCLRCDKRGYCDSCISTWYSDIPLEEIQKICPACRGTCNCKVCLRGDNLIKVRIREIPVQDKLQYLHSLLSSVLPEVKQIHHEQCAELELDKRLHGASIKLERQRLNNDEQMCCNFCRVPIIDYHRHCMNCSYDLCLNCCQDLREASMLGTKGEAAEKETLSEQVKPTKLKLNLADKFPAWKGNDDGSIPCPPKDYGGCGFSSLTLTRIFKMNWVAKLVKNVEEMVTGCKVYDINSPQKTRSSNRFCQSAHREDSDDNFLYCPSSQDIKTEGIGNFRKHWIRGEPVIVKQVCDDSSISNWDPSVIWRGIRETSDEKTKDDNRTVKAIDCLDWSEVDIELGQFIKGYSEGRLRDDGWPEMLKLKDWPSPSASEELLLYQRPEFISKMPLLEYIHSKWGLLNVAAKLPHYSLQNDVGPNIFISYGTYEELGSGDSVTNLHLEMRDMVYLLVHTSEVKLKGRQEEKIEKGKEASMESEAKESPGDVQTSLDEGRTPDLSLGGHDQQGDHGEKLNNDKDEEMEDQGIDTTSSVEAKTVNCENLHSDNGDISQITHPGALWDVFRRQDVPKLIEYLQIHWEEFGKPTSATTDSVQHPLYDEAIFLNRHHKTQLKEEFGVEPWSFEQHLGQAIFIPAGCPFQSRNLQSTVQLGLDFLSPESLGEAVRLADEIRCLPTEHEAKRQVLEVGKISLYAASSAIKEVQKLVLDPKLGPELGFEDPNLTSLVSENLEKMIRRRQVTCA* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0232 941 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 185 253 IPR018866 -
Vvi14g0232 941 Pfam WRC 18 58 IPR014977 -
Vvi14g0232 941 ProSiteProfiles WRC domain profile. 17 61 IPR014977 -
Vvi14g0232 941 Pfam JmjC domain, hydroxylase 758 850 IPR003347 -
Vvi14g0232 941 SMART cupin_9 579 871 IPR003347 -
Vvi14g0232 941 MobiDBLite consensus disorder prediction 663 734 - -
Vvi14g0232 941 MobiDBLite consensus disorder prediction 151 166 - -
Vvi14g0232 941 ProSiteProfiles Zinc finger RING-type profile. 192 239 IPR001841 -
Vvi14g0232 941 MobiDBLite consensus disorder prediction 1 21 - -
Vvi14g0232 941 MobiDBLite consensus disorder prediction 136 150 - -
Vvi14g0232 941 Gene3D Cupin 459 880 - -
Vvi14g0232 941 MobiDBLite consensus disorder prediction 705 720 - -
Vvi14g0232 941 MobiDBLite consensus disorder prediction 663 680 - -
Vvi14g0232 941 MobiDBLite consensus disorder prediction 111 194 - -
Vvi14g0232 941 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 19 905 IPR045109 GO:0032454|GO:0033169
Vvi14g0232 941 ProSiteProfiles JmjC domain profile. 572 871 IPR003347 -
Vvi14g0232 941 SUPERFAMILY Clavaminate synthase-like 481 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0232 Vvi-Chr14 2050801 2057311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0232 18 58 GRF Transcription Factor Family AT3G13960 51.220 5.10e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi14g0232 JmjC 5.1e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0232 K15601 - vvi:100249389 1885.54