Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0225 ATGTGTCTTTTTCTTCTTGGAAAGTGTTTTCACATTATGGATGGCAACAATGTACACTCTGACCAAGTCATTGCAGAGCTGATTGAAATGGGATTTGAGTTTTCAGCTGTTACAGAAGCTATAGAAGTTGTTGGTCCATCATTAGATGATGCTATTGAGTTTATTTTGAATGGTCCTCATAGATCCAGTAGGGGGGCATCAAGTAATTCTAAATGTCCTACCAGCACTGGAAAAGCTCTGGACAAAACAGCTTTGATCTCCTCGCACTCTCTGGATCAAATGCGTCAGTCTAGCATAACAGAACATCTCCAACCAGTAGGTAGATCCAAACGGATCAGAACTAATTCTGTATATAATGCAGTATCACCCTATGGGTCAGAGATGTTGCCTGGTCATCTGGAAGAACAGGTGTTGTCATTTTCTGGTGAGGGTTGTAATCTGAAAGCTGCCTCAGAGTTGTCTGCACTGCCAGTTTGTTGCCAACAAGAGCTGGAGATTGGAAAGGATTGGGTGCAAAGAGTCAATAGTCTCTTGCACAAGCATTTTGGGATTTTGTCCTTGAAGAGTTTCCAGAAGGAAGCCCTGTCTGCTTGGTTAGCTCACCAAGACTGTCTTGTTCTTGCTGCAACAGGATCTGGAAAATCTCTCTGTTTTCAAATCCCAGCACTTCTGACAGGAAAGGTTGTGGTAGTAATTTCACCCTTGATAAGTTTAATGCACGATCAGTGCTTAAAGCTTGCAAAACATGGGGTGTCAGCTTGCTTTCTGGGGTCTGGACAACCTGACAGCAGTGTGGAGCAAAAAGCAATGAGTGGCATGTATGAGATAATTTATGTTTGCCCAGAGACAGTATTAAGACTAATAAAACCACTTCAGAGGCTTGCAGAAAATCGCGGAATTGCACTATTTGCAATTGATGAAGTTCATTGTGTTTCTAAGTGGGGCCATGATTTTCGACCCGACTATAGGCGATTATCTGTCTTGCGAGAGAACTTCAGTGCTTGCAGCTTAAAATTTTTAGAATTTGATATACCAATAATGGCATTGACTGCTACTGCAACAATTTGTGTCCGAGAAGATATCCTTCATTCACTGTGCATGTCAAAGGAAACAAAAATTGTGCTCACTTCATTTTTCCGATCAAATTTAAGGTTTTCAGTAAAACATAGTAGAACATCATCTCCATCTTCTTATGAGAAGGATTTCTCTGAGTTGATGGATGTGTACACAAAGAGCAAGGTTGGTAAGAAGAAACAAAAAATCTTCTCTCAAGAGTTGGATGATGCATCTGATGACTCCACCAGCTCTGCTGATAGGAGCTTATCTGAGGCAGATAGAATGTCTCCAAGTGATGTGGAAAACAATGGTGATGGCTACTTTGGGGAAAATGATGATGAAGCAAATTCATCGCAGGAAAATGGCTCAGCTGCTTCAAAGCAGAGACAGATGTCAGTCGAATATCTGGAAAATGAGGTTGACCTCTTTCAGAGTGTAGATGACTGGGATGTTTCCTGTGGTGAATTCTCTGGACAACCTCCTACTGAACATACATTTGGCTCATCTGAGACATTGGATCCATCAATGAAACTGGATGAAAGATTGACGCTTTTGAAGGGGCCTTTAGAACAAGGACCAACTATCATATATGTTCCTACTAGAAAAGAAACATTAAACATAGCAAAATATCTTTGTCGGTGTGGTGTAAAGGCTGCTGCTTACAATGCAAAGTTGCCGAAATCACATCTAAGGCGTGTTCACAAGGAATTCCATGATAATGCTTTACAGGTTGTTGTTGCAACAATTGCTTTTGGAATGGGGATTGATAAGTTAAATGTCCGAAGAATCATCCATTATGGTTGGCCACAGAGTTTAGAAGCATATTATCAAGAAGCAGGTCGAGCTGGGAGGGACGGGAAATTAGCAGATTGCATTCTATATGCTAACCTTTCAAGAGTACCAACTCTTTTGCCAAGTCAAAGAAGTGAAGATCAGACAAAACAAGCATATAAGATGTTATCTGATTGCTTCAGATATGGAATGAATACTACATGTTGTCGAGCCAAAACACTTGTGGAGTACTTTGGGGAGGATTTTTGTCATCAAAGTTGTATCTTGTGTGATGTGTGTGTTAATGGACCTCCTGAAAAGCAGAATTTGAAAGATGAGGCAGATACTTTTATGCACGTGATTGCTGCTCATTATGGGAAGAGCAGTTTTGTGGATGATTTGTATGATGGTGTGATATATGGTGATGTTGAACAGCAGAGATTCATGGATAAACCAAATCTCAGGATGCTTGTCAGTAGAATAAGAGAACAGTTTCAAAAATTTGCAGCAACTGATCTGTTATGGTGGCGAGGTCTTGCTCGAATCATGGAAGATAAAGGGTACATCAGAGAGGGAGAGGACAGGATCCATGTCCAGATAAAATTTCCAAAGCCAACAAAACTGGGACTGGAGTTCTTGCAATCCACAACAGAGCAAACATTCGATGTTTATCCCCAAGCAGATATGCTGCTCTCAACGAGAAACCCCAAATCTTATTCCACTTTCTCAGAATGGGGAAAAGGCTGGGCTGATCCTGAGATTCGTCGCCAGCGCTTAGAAAGGAGGCGATCCCAAAGAAAGCCTAGGAAAAGAAAATCAAGAAAACATCAACCCAACATGAAAACGGCTCGTGGAAGGTTAGCAGCAAAACTCTTAATACAGAAACGATAA 2718 0.4113 MCLFLLGKCFHIMDGNNVHSDQVIAELIEMGFEFSAVTEAIEVVGPSLDDAIEFILNGPHRSSRGASSNSKCPTSTGKALDKTALISSHSLDQMRQSSITEHLQPVGRSKRIRTNSVYNAVSPYGSEMLPGHLEEQVLSFSGEGCNLKAASELSALPVCCQQELEIGKDWVQRVNSLLHKHFGILSLKSFQKEALSAWLAHQDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLAKHGVSACFLGSGQPDSSVEQKAMSGMYEIIYVCPETVLRLIKPLQRLAENRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSACSLKFLEFDIPIMALTATATICVREDILHSLCMSKETKIVLTSFFRSNLRFSVKHSRTSSPSSYEKDFSELMDVYTKSKVGKKKQKIFSQELDDASDDSTSSADRSLSEADRMSPSDVENNGDGYFGENDDEANSSQENGSAASKQRQMSVEYLENEVDLFQSVDDWDVSCGEFSGQPPTEHTFGSSETLDPSMKLDERLTLLKGPLEQGPTIIYVPTRKETLNIAKYLCRCGVKAAAYNAKLPKSHLRRVHKEFHDNALQVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLSRVPTLLPSQRSEDQTKQAYKMLSDCFRYGMNTTCCRAKTLVEYFGEDFCHQSCILCDVCVNGPPEKQNLKDEADTFMHVIAAHYGKSSFVDDLYDGVIYGDVEQQRFMDKPNLRMLVSRIREQFQKFAATDLLWWRGLARIMEDKGYIREGEDRIHVQIKFPKPTKLGLEFLQSTTEQTFDVYPQADMLLSTRNPKSYSTFSEWGKGWADPEIRRQRLERRRSQRKPRKRKSRKHQPNMKTARGRLAAKLLIQKR* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0225 905 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 17 58 IPR015940 -
Vvi14g0225 905 FunFam ATP-dependent DNA helicase 649 827 - -
Vvi14g0225 905 Pfam RecQ zinc-binding 651 709 IPR032284 -
Vvi14g0225 905 MobiDBLite consensus disorder prediction 435 449 - -
Vvi14g0225 905 Pfam Helicase conserved C-terminal domain 534 637 IPR001650 -
Vvi14g0225 905 Gene3D - 149 379 IPR027417 -
Vvi14g0225 905 Gene3D - 521 647 IPR027417 -
Vvi14g0225 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 650 IPR027417 -
Vvi14g0225 905 MobiDBLite consensus disorder prediction 423 483 - -
Vvi14g0225 905 MobiDBLite consensus disorder prediction 464 483 - -
Vvi14g0225 905 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 529 691 IPR001650 -
Vvi14g0225 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 253 IPR027417 -
Vvi14g0225 905 Gene3D - 651 835 IPR036388 -
Vvi14g0225 905 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 371 IPR014001 -
Vvi14g0225 905 MobiDBLite consensus disorder prediction 865 894 - -
Vvi14g0225 905 FunFam ATP-dependent DNA helicase 520 647 - -
Vvi14g0225 905 Pfam DEAD/DEAH box helicase 190 354 IPR011545 GO:0003676|GO:0005524
Vvi14g0225 905 SMART helicmild6 557 638 IPR001650 -
Vvi14g0225 905 Gene3D - 19 81 - -
Vvi14g0225 905 SUPERFAMILY UBA-like 19 60 IPR009060 GO:0005515
Vvi14g0225 905 MobiDBLite consensus disorder prediction 869 890 - -
Vvi14g0225 905 PANTHER DNA HELICASE RECQ FAMILY MEMBER 160 805 - -
Vvi14g0225 905 FunFam ATP-dependent DNA helicase 158 379 - -
Vvi14g0225 905 CDD DEXHc_RecQ 176 378 - -
Vvi14g0225 905 NCBIfam RecQ family ATP-dependent DNA helicase 177 392 IPR004589 GO:0004386|GO:0006310
Vvi14g0225 905 SMART ultradead3 183 388 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0225 Vvi-Chr14 1929525 1936429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0225 441 638 Eukaryotic Initiation Factors Gene Family AT5G11170 22.111 1.60e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0225 K10900 - vvi:100257897 1754.57