Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0223 ATGATTTGGCTGAACAGCATGGGTTCTGGGTTGAAGATTCTCCACATGATCTCCATCATCATATCCATTCTCATTTCATTCCAAAGTGCCCGCATTTTGATTCCTGCTGTTTCTTCTGCTGCTGTATTGAATGCAGAAGAGAATTATTTCAATGCTGTTGATGGCCTAAAAAGCCTGCATTTCATTGAGGACAACACCACAGATGGTAAAGAACAAATTGAAAAGGTCTCTGGTGAGGATGATAATGCAGAAAAGGAGCCTCTGATATTGGAAAAGTTCAGAGTTCTGCTTGGACTAAAGAGCTTCAAAGCCAGAAGAACCCGATATAATGGTGAACTTGAAAATTGTTCCCCATCCCCTTCTCCATCACCCTCCCTTGAAGATGAGGCTGAAGCACCGGCTCCGGTCCCTGCACCGCCTCTCCATGCACATTCCCATCCTCCCCATCACCCCAAACAGATCCCACCAGCCCACAGGGCTCACAGAGAGAGAAGAGGTAAAGGTAGAGTAAAAAAAATTATAGTAGCAGTTCTTGTATCTACTGGAGCCACATCTGTAATCTGTGTTCTGGGTTTCATCTGGTTCTGCCTAAAATTCAGAAAACCCAGGAAGAGATCTGCAAGAACTGTCACAATCCACGGCAAAGAGAAAGGAAGCAGAGGCAGATCAAATAATGGAACAGCAAGCAAGGTGAGCATCAATCCTGGCCTAGACCTCTTTTATCTTGACTCTATAGAATCAAGTTTAGAGCCACAAGGTACTTGCCTTAAACAAAGTTCCCAAACTCCAAACATATCAACAACAAATCAGAACTCAATTAGTCCTACATTGCTTGAGAGCGAAGGACTGGGCCACCGACAACTGAGAAAATCAGAATCTGGTCATGTTAGCTATGCGTCGGGTGAGGGAATTGTGTCGGTCCATGGGGATGCAGAGTCAGGGGATGATCATTCCAATGGGGGTGGCTCTTCTTGTAGGAAAAAAAATGTTTCAATTGAAGCTCATTTTTCAGATGATGATGATGAATCTTTTCACTCTTTCTGTGAGTCACATTCATCCAATGTGAGGCTTTCGAATGCTTCAGCTGGTAGTTTTAGGGATGCAGCTGAAGTTTTCTCCCCAAATGTGTATAAGATTCAGCCTTCTCTGCCATCTTCTTCTAACTTGCCTATTCCACCAGCAACCCCAGATCTCATTCCAGCCCCAGCTCCAAATATTGGGTCATTTCCTCCTCCCATTTCCACTAAAAACCCGAAACAGGAAGCTTCATGTTCTTCAGAATCATGTCAGAAAGATCTCCCACCACCACCTCCACCGCCACCGCCACCACCACGGCCTCCACAGTTTTCACCATCTCCTTCTTTTAGCACAACCCGGCTTTCATCTAAAGCTTCGTGTTCTTATACATTGGCAAATTTTTCGTCTCCTAGGAACTCAGACTCTTCTTCAGGATCAAACCAAACCCCACAAAGGGACTTGCAGCCTCCATCTCATAAACCTCCCAATCCTCCACCACCTCCAGGAGGCATCCCTCCGCCGCCTTGCCCGCCTCCATTTCTGAGAGTAAATAGTAATTCCCTCAAAACCCCGCCGCCTCCTCCATCTCAACTCTCTCAATTTATCCCTCTGGGAAAAGATGGAGCTCCCCTGCCAAAGTTGAAGCCATTGCACTGGGACAAAGTCAGAGCTGCGCCAAACCGTTCCACAGTGTGGGACAAGCTGAGATCGAGTTCATTCGAACTGGATGAGAAAATGATCGAATCACTTTTCGGGTACAATCTGCAAACTACAATGAAGAATGATGAGGCAAAGAGCAAGAGCCCTTCTCCAAGCAAGCATGTTCTTGAGCCCAAGAGACTACAGAATATAACCATACTCTCAAAAGCCTTGAATGCCACTGCTGTACAAGTATGTGATGCATTACAACAAGGGGACGGTCTGTGCTTACAACAACTAGAGGCATTGGCCAAGATGGTGCCCACTGATGAAGAGGAGGCTAAGCTCTCAAGCTACAATGGAGACATCAATGAACTGGGCTCAGCAGAGAGGTTTGTTAAGGCAATGCTGGATATCCCATTTGCCTTTCTGAGGATTGAAGCCATGCTCTACAAAGAAACATTTGAAGATGAAGTGGTTCATCTCAGAAAGTCCTTCTCAATGTTAGAGGAGGCCTGCAAGGAGCTGAGGTCAAGCAGGCTCTTCCTGAAACTGCTTGAAGCTGTGCTGAAAACCGGGAACAGGATGAATGTAGGGACAATCAGAGGAGGGGCAAGAGCATTCAAGCTGGACGCCCTTCTTAAGCTTTCTGATGTGAAAGGAACAGATGGAAAAACCACCTTACTCCACTTTGTGGTCCAAGAAATGATCCGGACAGAAGGAATCAAAGCTTCAGAGAGCATCATAGGGAAGATCAATCTGAAAACAAAGAACAAGACTGTTGAAGAAAGAGAAGAAGGGTACAGAAGAATGGGCCTAGACCTTGTCTCAGGGCTCAGCACTGAGCTCTGCAATGTGAAGAAGACAGCCACAGTGGACATGGATGTTCTTGCAAGCTCAGTCTCAAACCTCTCGGATGGAAAGAGAAAGCTGCAGAATCTGGTAAACAATGACTTGGGTAATGACCAGAGAAGCAGAAACTTTGTGGGTTCCATGAAATCATTTCTGGGTCATGCAGAAAAGAATCTGAAGGAGTTGCAGGAAGATGAAAATAGAGTCCTGTTACAAGTTAGAGAAATCACAGAGTATTTCCATGGAGATGTGAGCAAGGATGAAGCTAATCCACTTAGGATTTTTGTGATTGTCAGAGACTTTCTGGGTATGCTGGACCATATCTGTAAAGAGCTTAGAAGCGCCAAAATCCCAAGATCTCCAAATCCTCTGTCCCCATTCAGATAG 2895 0.4553 MIWLNSMGSGLKILHMISIIISILISFQSARILIPAVSSAAVLNAEENYFNAVDGLKSLHFIEDNTTDGKEQIEKVSGEDDNAEKEPLILEKFRVLLGLKSFKARRTRYNGELENCSPSPSPSPSLEDEAEAPAPVPAPPLHAHSHPPHHPKQIPPAHRAHRERRGKGRVKKIIVAVLVSTGATSVICVLGFIWFCLKFRKPRKRSARTVTIHGKEKGSRGRSNNGTASKVSINPGLDLFYLDSIESSLEPQGTCLKQSSQTPNISTTNQNSISPTLLESEGLGHRQLRKSESGHVSYASGEGIVSVHGDAESGDDHSNGGGSSCRKKNVSIEAHFSDDDDESFHSFCESHSSNVRLSNASAGSFRDAAEVFSPNVYKIQPSLPSSSNLPIPPATPDLIPAPAPNIGSFPPPISTKNPKQEASCSSESCQKDLPPPPPPPPPPPRPPQFSPSPSFSTTRLSSKASCSYTLANFSSPRNSDSSSGSNQTPQRDLQPPSHKPPNPPPPPGGIPPPPCPPPFLRVNSNSLKTPPPPPSQLSQFIPLGKDGAPLPKLKPLHWDKVRAAPNRSTVWDKLRSSSFELDEKMIESLFGYNLQTTMKNDEAKSKSPSPSKHVLEPKRLQNITILSKALNATAVQVCDALQQGDGLCLQQLEALAKMVPTDEEEAKLSSYNGDINELGSAERFVKAMLDIPFAFLRIEAMLYKETFEDEVVHLRKSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLSDVKGTDGKTTLLHFVVQEMIRTEGIKASESIIGKINLKTKNKTVEEREEGYRRMGLDLVSGLSTELCNVKKTATVDMDVLASSVSNLSDGKRKLQNLVNNDLGNDQRSRNFVGSMKSFLGHAEKNLKELQEDENRVLLQVREITEYFHGDVSKDEANPLRIFVIVRDFLGMLDHICKELRSAKIPRSPNPLSPFR* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0223 964 PANTHER FORMIN-RELATED 469 952 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vvi14g0223 964 Pfam Formin Homology 2 Domain 547 941 IPR015425 -
Vvi14g0223 964 Gene3D Formin, FH2 domain 565 956 IPR042201 -
Vvi14g0223 964 MobiDBLite consensus disorder prediction 111 167 - -
Vvi14g0223 964 Coils Coil 888 908 - -
Vvi14g0223 964 MobiDBLite consensus disorder prediction 306 326 - -
Vvi14g0223 964 MobiDBLite consensus disorder prediction 452 493 - -
Vvi14g0223 964 MobiDBLite consensus disorder prediction 145 167 - -
Vvi14g0223 964 MobiDBLite consensus disorder prediction 412 430 - -
Vvi14g0223 964 MobiDBLite consensus disorder prediction 388 411 - -
Vvi14g0223 964 ProSiteProfiles Formin homology-2 (FH2) domain profile. 543 964 IPR015425 -
Vvi14g0223 964 MobiDBLite consensus disorder prediction 494 520 - -
Vvi14g0223 964 MobiDBLite consensus disorder prediction 431 451 - -
Vvi14g0223 964 MobiDBLite consensus disorder prediction 254 277 - -
Vvi14g0223 964 MobiDBLite consensus disorder prediction 388 548 - -
Vvi14g0223 964 SMART it6_source 543 956 IPR015425 -
Vvi14g0223 964 SUPERFAMILY Formin homology 2 domain (FH2 domain) 556 950 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0223 Vvi-Chr14 1915224 1918892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0223 528 964 FH2 protein (formin) Gene Family AT3G05470 72.500 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0223 - - vvi:100240767 1710.27