Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0221 ATGAGTCGGGGAAGCGCAGCGGGAGCGAAGGGGAAGAAGAAGGGAGCGACCTTCACGATCGACTGCGGGAAGCCGGTGGAGGATAAGATCATGGACATTGCTTCGCTGGAGAAGTTTCTCCAGGAGAGGATTAAAGTAGGCGGCAAGGCCGGTGCTCTTGGTGACACCGTTACCGTCACCCGTGAGAAAAGCAAGATCACCGTCACTTCTGAGAGCAACTTCTCCAAGAGGTATTTGAAGTATTTGACAAAAAAATACTTGAAGAAACACAACGTCCGCGACTGGCTTCGTGTAATTGCATCCAACAAGGACCGAAATGTTTATGAGCTTAGGTACTTCAACATTGCAGAGAATGAGGGGGAGGAGGAGGATTAA 375 0.4987 MSRGSAAGAKGKKKGATFTIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVTREKSKITVTSESNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0221 124 PANTHER 60S RIBOSOMAL PROTEIN L22 2 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vvi14g0221 124 Gene3D - 5 124 IPR038526 -
Vvi14g0221 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vvi14g0221 124 FunFam 60S ribosomal protein L22-2 5 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0221 Vvi-Chr14 1885772 1887828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0221 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.903 2.30e-68 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0221 K02891 - vvi:100266503 220.705