Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0219 ATGAGTAGCCGTTCTAGCCGCACTGTCTATGTTGGCAATCTTCCTGGTGATATTCGTGAGAGAGAAGTAGAAGATCTGTTTTACAAGTATGGGCCCATTGTTGACATTGATTTGAAGATCCCTCCAAGACCACCAGGCTATGCTTTTGTTGAGTTCGAAGATGCTCGTGATGCCGAAGATGCTATTTATGGTCGGGATGGGTATAATTTTGATGGACATCGACTGCGAGTCGAACTTGCTCATGGTGGGAGAGGACAGTCATCATCAGTGGACCACTATAGCAGTTACAGTAGCAGTAGCCGTGGTGGACTTTCACGGCACTCTGAATATCGAGTATTGGTTACTGGATTACCTTATTCTGCTTCCTGGCAAGATCTAAAGGACCATATGCGTCGAGCTGGGGATGTTTGTTTCTCCCAAGTGTTCCGTGGTCGCGGAGGGATGACTGGAATTGTGGATTATACAAACTATGATGATATGAAATATGCTATAAGGAAGCTTGATGACTCTCTGTTTAAGAATCAATTTTCTCGGGCTTATATACGGGTGAGGGAGTATGAACCTAGAAGCTTCTCTCGAAGTCCCAGTCGTAGCCCATCTGTGTCAAGAAGCAGAAGCCCCCGTCGCAGTCGTAGCTATAGTTATTCAAATCATTCATCAGGCAGATCTCTTTCGAGGTCTGTTTCTTCACAGGCACGCTCGAGATCAGTTTCAAGGTCCAGATCTCCCTTAATATCTCCTCGTCGTCACAAGCGGGTGAGCAGAAGCCCAAAGAAATACAGGAGCCCAAGCAGGAGCTTATCTGGATCTCGTTCACCCTCGTTCTAG 828 0.465 MSSRSSRTVYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYGRDGYNFDGHRLRVELAHGGRGQSSSVDHYSSYSSSSRGGLSRHSEYRVLVTGLPYSASWQDLKDHMRRAGDVCFSQVFRGRGGMTGIVDYTNYDDMKYAIRKLDDSLFKNQFSRAYIRVREYEPRSFSRSPSRSPSVSRSRSPRRSRSYSYSNHSSGRSLSRSVSSQARSRSVSRSRSPLISPRRHKRVSRSPKKYRSPSRSLSGSRSPSF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0219 275 CDD RRM2_SF2_plant_like 110 185 - -
Vvi14g0219 275 Gene3D - 1 109 IPR012677 -
Vvi14g0219 275 MobiDBLite consensus disorder prediction 244 259 - -
Vvi14g0219 275 MobiDBLite consensus disorder prediction 260 275 - -
Vvi14g0219 275 MobiDBLite consensus disorder prediction 187 275 - -
Vvi14g0219 275 SMART rrm1_1 8 78 IPR000504 GO:0003723
Vvi14g0219 275 SMART rrm1_1 111 180 IPR000504 GO:0003723
Vvi14g0219 275 Gene3D - 110 187 IPR012677 -
Vvi14g0219 275 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 109 - -
Vvi14g0219 275 FunFam serine/arginine-rich splicing factor SR34A-like 110 187 - -
Vvi14g0219 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Vvi14g0219 275 MobiDBLite consensus disorder prediction 192 243 - -
Vvi14g0219 275 CDD RRM1_SF2_plant_like 8 79 - -
Vvi14g0219 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Vvi14g0219 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 175 IPR000504 GO:0003723
Vvi14g0219 275 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 4 271 - -
Vvi14g0219 275 SUPERFAMILY RNA-binding domain, RBD 5 179 IPR035979 GO:0003676
Vvi14g0219 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0219 Vvi-Chr14 1856224 1869739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0219 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 35.526 2.89e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0219 K12890 - vvi:100249315 384.415