Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0201 ATGCAGAACGAAGAGGGACAAAACATGGATCTTTACATCCCTAGGAAGTGGCTCATCACTTCAAAGGATCATGCATCAGTCCAGATTAACATTGGGCATTTAGATGAGAGTGGAACTTACACCGGTCAATTTACTACCTTTGCTCTTTGCGGCTTTGTCCGGGCTCAGGGAGATGCTGACAGTGCCCTTGATAGGCTCTGGCAAAAGAAGAAAGCCGAAGTCCGGCAACAGTAG 234 0.4744 MQNEEGQNMDLYIPRKWLITSKDHASVQINIGHLDESGTYTGQFTTFALCGFVRAQGDADSALDRLWQKKKAEVRQQ* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0201 77 PANTHER 40S RIBOSOMAL PROTEIN S21 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vvi14g0201 77 Pfam Ribosomal protein S21e 1 71 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vvi14g0201 77 PIRSF RPS21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vvi14g0201 77 Gene3D - 1 76 IPR038579 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0201 Vvi-Chr14 1688239 1690983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0201 1 76 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 77.778 1.71e-42 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0201 K02971 - vvi:100246017 150.599