Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0188 ATGGCCTTCGCCAATTCAGCCAATTTCTTTCTTATTCTAATCCTTTTACCTTCCCTTGAAGCCCTCTCCCATGGAACCTCCTTCAATGCACAAAACCAAACCCTTGAACCTCTCCCCCATGCCTCCTCCTTCAATGCCCAAAACCAAACCCTTGAACCTCTCCCCCATGCCTCCTCCTCCAAAGACCAAAACCAGACCCTTCAAGCCCTGATCATACAAGCTTGCGCCAAAGTGGAGAACTACAGTTCATGTGTCTCCAGCATCCACAATGAGCTTGAAAGTATGGGGCCTCGCAGCCCCAGTTCCATCCTGACTGCCGCCCTCAAGACCACCCTCAATGAAGCCCGAATCGCCGTTCAAATGGTTACCAGGTTCAATGCTTTGTCAAGTAGTTATCGTGAACAAATAGCCATTGAAGACTGCAAGGAACTGCTTGATTTTTCAGTCTCAGAGCTGGCCTGGTCCTTGCTGGAGATGAAGAGTATTCGAGCTGGTTCCACGAATGTTCAATCTGAAGGAAACCTGAAGGCATGGTTGAGTGCTGCGCTGAGTAACCAAGACACATGCCTGGAAGGCTTCGAGGGCACGGACCGTCGAATCGAGAGCTTCATCAGAGGAAGCCTGAAGCAAGTCACACAGCTCATCAGTAATGTTCTAGCCATGTATGTTCAACTCCATAGCTTGCCCTTTAAACCTCCCCGAAATAGTACCGAAAAAAGCCCAAGTCAGGACTTCCCAAAATGGATGACGGACGGGGATAAAGACCTTCTTCTTGCCCATCCAAACCAAATGGGGGTAGACACCATTGTATCGCTGGATGGCAGCGGTCATTACCGATCAATTGCGCAGGCCATTTATGAAGCTCCAAGCTATAGCAACAGGAGGTATATCATATACGTGAAGAAGGGAGTTTACAAGGAGAACATAGATATGAAGAAGAAAAAGACCAAGATCATGATTGTTGGGGATGGAATTGGAGCCACTGTGGTCACCGGAAACCGAAATTTCATGCAAGGATGGACCACTTTCAGAACTGCCACTGTTGCTGTGTCTGGGAAGGGATTCATAGCTAGAGACATAACCTTTAGGAACACGGCCGGACCAAAGAACTTTCAGGGTGTTGCGCTGCGCGTAGATTCTGATCAGTCCGCGTTCTACCGCTGCAGCATGGAGGGTTACCAGGACACCCTTTACGCCCACTCCCTCCGCCAATTCTACCGTGAATGTGACATCCATGGCACCATAGACTTCATATTTGGGAATGGTGCAGCAGTCCTCCAGAACTGCAAGATCTTCACCCGAAAACCATTGCCCCTACAGAAGGTCACAATCACCGCACAAGGCCGGAAAAGCCCAGACCAGAGCACTGGATTCTCCATCCAAGACAGCTATGTCTATGCCACTCAACCAACTTACTTGGGGAGGCCATGGAAGCAGTATTCAAGGACTGTTTTCTTGAATACTTACATGAGCAGCCTGGTCCAGCCCAGAGGATGGCTAGAATGGAATGGGAACTTTGCTTTAGGCACATTGTACTATGGTGAGTATAGGAATTATGGCCCCGGTGCACTGTTGTCTGGCCGCGTCCAATGGCCAGGTTATCATAAAATTCAGGATACTTCGGTGGCTAACTTCTTCACCGTTGGGCGGTTCATTGATGGGCTTTCATGGCTGCCATCCACTGGCGTCAGATTCTCAGCAGGTTTGAAGAATTAA 1716 0.4913 MAFANSANFFLILILLPSLEALSHGTSFNAQNQTLEPLPHASSFNAQNQTLEPLPHASSSKDQNQTLQALIIQACAKVENYSSCVSSIHNELESMGPRSPSSILTAALKTTLNEARIAVQMVTRFNALSSSYREQIAIEDCKELLDFSVSELAWSLLEMKSIRAGSTNVQSEGNLKAWLSAALSNQDTCLEGFEGTDRRIESFIRGSLKQVTQLISNVLAMYVQLHSLPFKPPRNSTEKSPSQDFPKWMTDGDKDLLLAHPNQMGVDTIVSLDGSGHYRSIAQAIYEAPSYSNRRYIIYVKKGVYKENIDMKKKKTKIMIVGDGIGATVVTGNRNFMQGWTTFRTATVAVSGKGFIARDITFRNTAGPKNFQGVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECDIHGTIDFIFGNGAAVLQNCKIFTRKPLPLQKVTITAQGRKSPDQSTGFSIQDSYVYATQPTYLGRPWKQYSRTVFLNTYMSSLVQPRGWLEWNGNFALGTLYYGEYRNYGPGALLSGRVQWPGYHKIQDTSVANFFTVGRFIDGLSWLPSTGVRFSAGLKN* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0188 571 NCBIfam pectinesterase inhibitor domain 56 226 IPR006501 GO:0004857
Vvi14g0188 571 CDD PMEI-like_4 84 225 - -
Vvi14g0188 571 ProSitePatterns Pectinesterase signature 1. 292 311 IPR018040 -
Vvi14g0188 571 Pfam Plant invertase/pectin methylesterase inhibitor 70 221 IPR006501 GO:0004857
Vvi14g0188 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 225 IPR035513 -
Vvi14g0188 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 223 IPR035513 -
Vvi14g0188 571 PANTHER PECTINESTERASE 70 559 - -
Vvi14g0188 571 Pfam Pectinesterase 267 554 IPR000070 GO:0030599|GO:0042545
Vvi14g0188 571 Gene3D - 262 569 IPR012334 -
Vvi14g0188 571 FunFam Pectinesterase 261 569 - -
Vvi14g0188 571 FunFam Pectinesterase 68 227 - -
Vvi14g0188 571 SMART PMEI_2 66 221 IPR006501 GO:0004857
Vvi14g0188 571 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Vvi14g0188 571 SUPERFAMILY Pectin lyase-like 265 568 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0188 Vvi-Chr14 1580383 1582176 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0188 63 571 Carbohydrate Esterase AT3G05620 64.423 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0188 K01051 - vvi:104881361 1123.23