Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0187 ATGGCTCAAAACTATTACAATAATGATAGAGGTAAGAAGAAGAAATTGGCCATTATTGGCTTTTCATCGATATTCCTGGTGGCCATGGTGATTGCCGTGATTGCTAGTGTTAGCTCTAGCTCCAGTGATTCCGGAAATGCCCAAAAACAAGAGATTTCTTCTTCAATGAAAGCTATCCAGGCCATTTGCCAACCCACTGATTATAAGGACGCTTGTGTAAACAGCCTCACGTCCAAGGCAGGCAATACAACTGACCCGAAAGACCTTGTTCAGGCAGCTTTTGCATCTGCCATGGAACACCTTTCTGCGGCTGCTAAGAACTCAACTCTCTTACAGGAGCTCAACAAGGACCCAAGAGCATCACAGGCCCTCCAGAACTGTGAGGACCTGGTGAATTACGCCATTGATGACCTCAAGAAATCATTTAACCAAGTGGGTGACTTTGATTACAGCAAGATGGATAACATAATTGCTGATATAAAGATTTGGCTCAGCGCTGTCATCACATACCAAGAGACTTGCTTGGATGGCTTTGAAAACACAACAGGAGATGCTGGAGAGAAAATGAGGCAGATCTTGAAGACCTCCATGGAGCTGAGCAGCAATGGCCTGGCCATTGTCGGCGAAGTCTCCTCCATCCTTTCCAACTTACAGCTCGCTAACCTCAACCGACGCCTCCTTTCTGATGACCCTGCAGATCCTGATAATCACATAGATGATGAGTTCCCCTACTGGAGCCATTCTGAAGGCCGAAAACTCCTTCAAGCTAACGTTTCCGAGCTCAAACCTAACCTGACTGTGGCCAAGGATGGGAGCGGGGATTTCAAGACTATTAACGAAGCCATTCGGCAGCTCCCCAAGTTCAGCAACCAAACCTTCATATTGTACATCAAGAAAGGAATTTACGAAGAACAAGTGCAGATAAATAAGACCTTCACCAATCTAATGATGGTGGGCGATGGCCCAACTAAGACCAAGATCACCGGAAGCTTAAACTTCGTTGATGGAACACCCACCTTCAAAACCGCCACTGTTGCTGTGCTCGGAGATGGTTTCATCGCTAAGGGTATCGGTTTTGAGAATTCTGCAGGCGCAGCAAAGCATCAAGCTGTAGCGTTGCGGGTTCAATCTGATAGGTCAATCTTCTACAACTGTCAAATGGACGGCTACCAAGACACGCTCTACACGCACACCAAGCGCCAGTTCTACCGCGACTGCACCATCTCAGGCACTATCGATTTCATATTCGGTGATGCAGCTGTGATATTCCAAAACTGCACGTTCGTCGTAAGGAAGCCACTGGACAATCAGCAATGTATAGTAACCGCACAGGGAAGGAAGGAGAGGCGCCAGCCATCCGCCATTATCATCCAGAACTCGACCTTCACTGCAGACCCTGAGTACTATCCATACAGAAATGAACTCAAGTCATACCTTGGGAGGCCATGGAAGGAGTTCTCAAGGACTATTATCATGGAATCTTACATAGAAGATTTGATTCAGCCTTCTGGGTGGTTGCCATGGGCGGGGGATTTCGCTTTGAGGACATGCTTCTACACAGAGTTCAGAAATAGAGGCCCTGGTGCAAAGACACACGACCGGGTGAAATGGAGAGGAATCAAGACGATCAAACCTTCCCACGCTATAGACTTTGCGCCGGGAAGATTCCTATCGGGTGATCGATGGATTCCTTCTACAGGAGTGCCCTACAACTCCGGTTTATTCACACTCCTTTCGAACGTGACTACTAAGTCTCAGGAGCCTCAAAGCGCAGCTCAAACGCTCCCGTTTTCTATGGCGGCATCGACGTCGTCCTCGTCCTCTGACTCATCCCGCCGGGACCACCGTCGCCGACGTCTTCATCGCCGAGAAAAAGATGACGCCCTCAAGATCCGCAAGAAGAGTCGCTCTCACACGAAGCGTCGCCGTCGGCACTCCGATTCTTCATCCTCCTCCTCCATCGATTATTCCAGGAGTGATAGTTCTTCTGACAGTAAGCATGAAACATCTAATCATTTGAAGAGACGCAAGCACAATGACAGGCCCAAGAAGGTGCTTGTTTGGATTTCTTTTCTCCTTTTTATATTACCTGTTTGTCTATCTGTGTAG 2109 0.4798 MAQNYYNNDRGKKKKLAIIGFSSIFLVAMVIAVIASVSSSSSDSGNAQKQEISSSMKAIQAICQPTDYKDACVNSLTSKAGNTTDPKDLVQAAFASAMEHLSAAAKNSTLLQELNKDPRASQALQNCEDLVNYAIDDLKKSFNQVGDFDYSKMDNIIADIKIWLSAVITYQETCLDGFENTTGDAGEKMRQILKTSMELSSNGLAIVGEVSSILSNLQLANLNRRLLSDDPADPDNHIDDEFPYWSHSEGRKLLQANVSELKPNLTVAKDGSGDFKTINEAIRQLPKFSNQTFILYIKKGIYEEQVQINKTFTNLMMVGDGPTKTKITGSLNFVDGTPTFKTATVAVLGDGFIAKGIGFENSAGAAKHQAVALRVQSDRSIFYNCQMDGYQDTLYTHTKRQFYRDCTISGTIDFIFGDAAVIFQNCTFVVRKPLDNQQCIVTAQGRKERRQPSAIIIQNSTFTADPEYYPYRNELKSYLGRPWKEFSRTIIMESYIEDLIQPSGWLPWAGDFALRTCFYTEFRNRGPGAKTHDRVKWRGIKTIKPSHAIDFAPGRFLSGDRWIPSTGVPYNSGLFTLLSNVTTKSQEPQSAAQTLPFSMAASTSSSSSDSSRRDHRRRRLHRREKDDALKIRKKSRSHTKRRRRHSDSSSSSSIDYSRSDSSSDSKHETSNHLKRRKHNDRPKKVLVWISFLLFILPVCLSV* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0187 702 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 210 IPR035513 -
Vvi14g0187 702 CDD PMEI-like_3 61 212 - -
Vvi14g0187 702 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Vvi14g0187 702 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Vvi14g0187 702 SUPERFAMILY Pectin lyase-like 262 572 IPR011050 -
Vvi14g0187 702 MobiDBLite consensus disorder prediction 587 679 - -
Vvi14g0187 702 MobiDBLite consensus disorder prediction 587 608 - -
Vvi14g0187 702 Pfam Pectinesterase 264 560 IPR000070 GO:0030599|GO:0042545
Vvi14g0187 702 Gene3D - 258 574 IPR012334 -
Vvi14g0187 702 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 210 IPR035513 -
Vvi14g0187 702 FunFam Pectinesterase 258 574 - -
Vvi14g0187 702 NCBIfam pectinesterase inhibitor domain 23 208 IPR006501 GO:0004857
Vvi14g0187 702 PANTHER PECTINESTERASE 25 566 - -
Vvi14g0187 702 SMART PMEI_2 54 206 IPR006501 GO:0004857
Vvi14g0187 702 FunFam Pectinesterase 55 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0187 Vvi-Chr14 1573577 1579550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0187 6 608 Carbohydrate Esterase AT3G05610 49.010 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0187 K01051 - vvi:104881362 1139.79