Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0150 ATGAGGAAGGGGTTTAGGTCAAAAGCGAAGATGGGTGCAGCTGGTCAGAGGAAAATTGGGTGCAAAACATCAAAAAAGAGGAGAAGAGTACTGAATGAAGAAGACGATGATAAGGATTATGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGTGGAAGAGGAGTTTTTGGGTCGGAGGAAAAATAGGATTAAAACATCATGGAAGAGACAAAAAGTTTTGTATGAGGAGGAAGAAGATGAGGATTATGATGAGGATTATAATGAGGATGACGAGGAATTTACACCAGAGGAAATGGATTGTGAGGATGAAGAGGAAGAGGCGCCAATAAGAAAGAAGAAAAACGGTAATAAGAGGGTGGCCAGCCGAGCTTCACAGAAGAAGGTGTTTGCCAAAGGCCGGAAACCAAAGAGAAATTCCAAGGTTTTGAAGAAGGGTTTGAGAAAGAAAAGAAAAAGGAATACTGGGTCGAGGAAGAAAGCCAAGGTTGATAATGATGGTGATTTCATAGATGAAAGGCCAGTCGTGAGAGAGAGAAAATCTCATAAGAGAAAGAGGAGATTGGCTCCAGCATCTGATTCAGAATTTGTAAGTTCTGGATCATCTGATTTTGAATTCACTATATCTGAGGAAGAGAGGGAGCAGGTGAGAGAAGCAGATGAGTTCTGCAGAAGATCAACGAATAATATGAGGAGTGCATCTCTGCCAGCTAAAACCATTGAGGAAGAAAGAAAGCCTCCAGTGAGAAAGGGTAAGGAGAAGGTTGAGGATGTCAAGAATGAGGTGGGAAAACAGGTGTGTGGGATTTGTCTGTCAGAAGAAGGAAAAAGAAGGGTACGAGGAACATTAGACTGTTGCAGTCATTATTTTTGTTTTGGTTGCATCATGGAATGGTCGAAAGTGGAATCCCGTTGCCCGTTGTGCAAGCAGAGGTTTATGACAATCAGCAAGCCTGCAAGAGCAAACACAGGAATTGACTTGAGAGATGTGATGATACAAGTTCCAGAGCGTGACCAGGTCTATCTACCATCTGAGGAAGAAATTAGGGGTTATCTTGATCCATATGAGAATGTGATCTGTACTGAATGCCACCAAGGTGGGGATGATGGCCTCATGTTACTGTGTGATCTCTGTGATTCACCTGCACACACCTATTGTGTTGGTCTTGGACGGGAAGTACCTGAGGGTAATTGGTATTGTGAAGGCTGTAGGCCTTCTCAAGTCCAGGATCCTTTATCTGATCACAGAACAACACAGAACACCTTGTCTGACAGACCATCTCCTGTTGGAAATATTGGGGAAAGTTTGGTGACCTCTCTGTCTTTGTTGTCTACACCATTCACTCAAGGTATTGGGATCAATATATCTCCTAGATACAGAAATGCTGAAGCTGCTTCTCCAGTATCAGCATCAGGGGCATCAACTCTATCAGGGAGACGGTGGATACACCGTCAGATCCATCAAATCCGTTCTAATAATAGAATGAGCCATGTGGCCGTTAGAAATATTGGGAATTCAGCTCCCAATTCAGGAAGTGATTTTTTAAATTCTCAAATTGATCAGGGTTTGGATACAGCATCTCAACATACAAAAGCACTAGAAACTGGGACATCTCACAGTACATTTTTAGAGGAAAGTTTACAGGACAACCGCTATCCATCATTGCAAAATATGGATCTTCTTTCTCCAAGATTGAGCCAGTCAAGGAGGCAAGACATCCAGGCTCCAACTACTACTGCTACTGCTGGCCCTGCCCGTGGGACATTATGGGATGAACTTGTAGGGATCAGTTCAGCATTCAATTCAATATCAGGTAATGAGCAACTCCATCAGTGCAGCAGCAGATCAAGCATCAGGTCAGACGGTAGTGTATCCCCTAATGCAGTTAGAGAGGGGAACCATTTCCATGTGGTGAAGGAACAATTGCAATCAATGGTTAGAAGCCATTTGAAAAGCTTGTCCAAAGATATTGATTTAGGTCTCAGTACCTTCAAGGACGTGGCAAGGAGTTCAACACACACTATCTTAGCTGCATATGGCCTCGAGCACAGGAGGAGCGAGGTTCACTCTGTGCCAACACCGCCCATCTGCTCCCACATTGAAAGAATAGCAGATGGGCAGATGAGTCTGATGAAAAGCTCCTGCTCGTGTTGCTTTGACTCCTATGTACGTGATGTAGTGAGGAGGATTCTGAACACGAAACTGCCACATTGGCTAGGAATTAGGGAGTGA 2232 0.4386 MRKGFRSKAKMGAAGQRKIGCKTSKKRRRVLNEEDDDKDYEEEEEEEEEEEVEEEFLGRRKNRIKTSWKRQKVLYEEEEDEDYDEDYNEDDEEFTPEEMDCEDEEEEAPIRKKKNGNKRVASRASQKKVFAKGRKPKRNSKVLKKGLRKKRKRNTGSRKKAKVDNDGDFIDERPVVRERKSHKRKRRLAPASDSEFVSSGSSDFEFTISEEEREQVREADEFCRRSTNNMRSASLPAKTIEEERKPPVRKGKEKVEDVKNEVGKQVCGICLSEEGKRRVRGTLDCCSHYFCFGCIMEWSKVESRCPLCKQRFMTISKPARANTGIDLRDVMIQVPERDQVYLPSEEEIRGYLDPYENVICTECHQGGDDGLMLLCDLCDSPAHTYCVGLGREVPEGNWYCEGCRPSQVQDPLSDHRTTQNTLSDRPSPVGNIGESLVTSLSLLSTPFTQGIGINISPRYRNAEAASPVSASGASTLSGRRWIHRQIHQIRSNNRMSHVAVRNIGNSAPNSGSDFLNSQIDQGLDTASQHTKALETGTSHSTFLEESLQDNRYPSLQNMDLLSPRLSQSRRQDIQAPTTTATAGPARGTLWDELVGISSAFNSISGNEQLHQCSSRSSIRSDGSVSPNAVREGNHFHVVKEQLQSMVRSHLKSLSKDIDLGLSTFKDVARSSTHTILAAYGLEHRRSEVHSVPTPPICSHIERIADGQMSLMKSSCSCCFDSYVRDVVRRILNTKLPHWLGIRE* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0150 743 MobiDBLite consensus disorder prediction 128 158 - -
Vvi14g0150 743 ProSitePatterns Zinc finger RING-type signature. 286 295 IPR017907 -
Vvi14g0150 743 SUPERFAMILY RING/U-box 266 315 - -
Vvi14g0150 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 329 IPR013083 -
Vvi14g0150 743 SMART ring_2 267 308 IPR001841 -
Vvi14g0150 743 MobiDBLite consensus disorder prediction 77 105 - -
Vvi14g0150 743 SUPERFAMILY FYVE/PHD zinc finger 330 406 IPR011011 -
Vvi14g0150 743 MobiDBLite consensus disorder prediction 410 430 - -
Vvi14g0150 743 MobiDBLite consensus disorder prediction 409 430 - -
Vvi14g0150 743 Pfam Ring finger domain 266 309 IPR001841 -
Vvi14g0150 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 426 IPR013083 -
Vvi14g0150 743 ProSiteProfiles Zinc finger PHD-type profile. 357 406 IPR019787 -
Vvi14g0150 743 PANTHER F18C1.6 PROTEIN 13 734 - -
Vvi14g0150 743 MobiDBLite consensus disorder prediction 36 53 - -
Vvi14g0150 743 CDD RING-HC_Topors 265 312 - -
Vvi14g0150 743 Pfam PHD-finger 359 405 IPR019787 -
Vvi14g0150 743 Coils Coil 30 60 - -
Vvi14g0150 743 SMART PHD_3 359 404 IPR001965 -
Vvi14g0150 743 MobiDBLite consensus disorder prediction 159 178 - -
Vvi14g0150 743 MobiDBLite consensus disorder prediction 565 584 - -
Vvi14g0150 743 MobiDBLite consensus disorder prediction 565 586 - -
Vvi14g0150 743 ProSiteProfiles Zinc finger RING-type profile. 267 309 IPR001841 -
Vvi14g0150 743 MobiDBLite consensus disorder prediction 1 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0150 Vvi-Chr14 1251882 1255640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0150 354 403 C2H2 Transcription Factor Family AT3G01460 46.154 1.56e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi14g0150 PHD 2.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0150 - - vvi:100240780 1362.82