Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0148 ATGTTCCTCTCAGCACGGAGGATCCGGGAAATTCCAGCTTGGGTGGATGTATCCGAAGAAATATCAGCAAACGTGCAACGGGCACGTACAAAAATGGCTGAATTAGTCAAAGCTCATGCTAAGGCTTTAATGCCGTCCTTTGGTGATGGTAAAGAAGATCAGCACAGGATTGAATCTCTTACCCAAGAGATAACTGATCTTTTGAAGAAATCAGAGAAGAGATTGCAGAAACTTTCTTCCACGGGGCCATCTGAGGATTCAAATGTTAGAAAAAATGTGCAGCGCTCTCTTGCTACCGACCTCCAGAACCTTTCAATGGAGCTTCGCAAGAAACAGTCATCATATTTGAAGCGTCTCCGGCAGCAAAAGGAAGGTCAGGATGGGGTTGACTTGGAGATGAACTTAAATGGAAATAAATCTTTGAGGGAAGATGACGAGTTCAGCGACTTGGGGTTTAATGAGCATCAGATGACCAAGCTAAAGAAAAATGAGGCCTTTACAGCTGAGAGGGAGAGAGAGATCCAACAGGTTGTGGAATCAGTAAATGAGCTTGCTCAAATCATGAAAGATCTGTCAGTCCTTGTGATAGACCAGGGCACCATTGTTGATCGAATAGATTACAACATTCAGAATGTCGCAGCATCAGTGGAGGAGGGCTTCAAACAACTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGAATGGTGATGTGTGCTACAGTGCTCGTCATCATGTGCTTCGTCATGTTGGTCCTTCTAATCCTCAAGACGATATTATTGTGA 783 0.4444 MFLSARRIREIPAWVDVSEEISANVQRARTKMAELVKAHAKALMPSFGDGKEDQHRIESLTQEITDLLKKSEKRLQKLSSTGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSSYLKRLRQQKEGQDGVDLEMNLNGNKSLREDDEFSDLGFNEHQMTKLKKNEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVAASVEEGFKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLILKTILL* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0148 260 SMART SynN_4 6 120 IPR006011 GO:0016020
Vvi14g0148 260 SUPERFAMILY t-snare proteins 11 219 IPR010989 GO:0016020|GO:0016192
Vvi14g0148 260 ProSitePatterns Syntaxin / epimorphin family signature. 170 209 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi14g0148 260 Pfam SNARE domain 200 252 IPR000727 -
Vvi14g0148 260 CDD SNARE_syntaxin16 168 225 - -
Vvi14g0148 260 SMART tSNARE_6 159 226 IPR000727 -
Vvi14g0148 260 Gene3D - 7 218 - -
Vvi14g0148 260 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 164 226 IPR000727 -
Vvi14g0148 260 PANTHER SYNTAXIN 18 245 IPR045242 -
Vvi14g0148 260 FunFam Syntaxin-43 11 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0148 Vvi-Chr14 1220321 1226731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0148 12 260 SNARE and Associated Proteins AT5G26980 79.920 3.41e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0148 K08489 - vvi:100259549 459.914