Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0146 ATGATGGATCTGAGCAAAAAGGAATCATTGTCTGAGGAAATGAATGAGATCAAGAAATGTTGTACTGATTGCAAGACCACCAAGACGCCCCTGTGGAGAGGTGGGCCAGCTGGGCCTAAGTCACTCTGCAATGCATGTGGGATCAGATACAGGAAGAGGAGGAGTTCCATGGTGGGTGTGAACAAAAAGAAAGAGAGAATGAACAGTGGTAGCCATGATTTGAGTGAAACTTTGAAGCAGTCACTCATGGCTTTGGGGAATGAGGTGATGATGCAGAGGCAGAGATCTTCAGTGAAGAAACAGAGGAGGAAGTTGGGGGAAGAAGAACAAGCAGCTGTACTGTTGATGGCACTCTCATGTGGCTCTGTTTTTGCCTAG 378 0.4683 MMDLSKKESLSEEMNEIKKCCTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRRSSMVGVNKKKERMNSGSHDLSETLKQSLMALGNEVMMQRQRSSVKKQRRKLGEEEQAAVLLMALSCGSVFA* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0146 125 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 16 55 - -
Vvi14g0146 125 ProSiteProfiles GATA-type zinc finger domain profile. 21 51 IPR000679 GO:0006355|GO:0043565
Vvi14g0146 125 SMART GATA_3 15 67 IPR000679 GO:0006355|GO:0043565
Vvi14g0146 125 ProSitePatterns GATA-type zinc finger domain. 21 46 IPR000679 GO:0006355|GO:0043565
Vvi14g0146 125 Pfam GATA zinc finger 21 55 IPR000679 GO:0006355|GO:0043565
Vvi14g0146 125 PANTHER OS01G0976800 PROTEIN 6 124 - -
Vvi14g0146 125 FunFam GATA transcription factor 16 16 78 - -
Vvi14g0146 125 Gene3D - 12 80 IPR013088 GO:0006355|GO:0008270
Vvi14g0146 125 CDD ZnF_GATA 21 54 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0146 Vvi-Chr14 1203390 1204232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0146 14 125 C2C2-Gata Transcription Factor Family AT5G49300 63.158 8.23e-43 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi14g0146 GATA 1.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0146 - - vvi:100256170 240.736