Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0145 ATGTCTCTCCGGCCGAGCGCGAGGACCGAGGTTCGACGGAACCGATACAAGGTCTCTGTAGATGCGGAAGAAGGTCGGAGGCGGAGAGAAGACAACATGGTTGAGATCCGAAAGAATCGGAGAGAAGAGAGCTTGCAGAAGAAGAGACGCGAAGGCCTTCAGGCCCAGACGTTACCTGCGTCAATCCATTCTGCTGCTGTTGAAAAGAAGTTGGAATTTTTACCATCCATGGTTGCTGGTGTCTGGACTGATGACAGTAACATACAACTTGAGGCAACTACACAATTTCGAAAGTTGCTTTCAATAGAGCGTTGTCCCCCAATTGAGGAAGTTATTCAATCTGGCGTTGTTCCTCGCTTTGTTGAGTTTCTTGTGAGGGAGGACTTCCCACAGCTTCAATTTGAAGCAGCATGGGCTCTCACAAACATTGCTTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGGCTGTGTGGGCCCTAGGAAATGTTGCCGGTGATTCCCCCAGATGCCGTGATCTTGTCCTTGGCCATGGGGCTCTGCTTCCTTTGCTGGCACAGTTGAACGAACATGCAAAGCTGTCTATGCTCAGGAATGCTACCTGGACACTTTCAAATTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGACAAAGCCTGCTCTTCCAGCACTTGAGCGTCTTATTCACTCAAATGATGAAGAGGTGTTAACTGATGCATGTTGGGCACTGTCTTATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTTATTGAAGCGGGTGTATGTCCTAGGCTTGTTGAACTTTTACTTCACCCATCTCCTTCTGTTCTCATTCCTGCACTTCGCACGGTTGGAAACATTGTCACTGGAGATGATATGCAAACCCAGTGCATAATCAACCATCAGGCTCTCCCTTGCCTTCTGAACCTGTTGACCAATAACCATAAGAAGAGCATCAAGAAGGAAGCTTGTTGGACTATTTCAAATATCACAGCTGGCAACAAGGAGCAGATTCAGGCTGTAATTGAGGCAAACATAATTGGTCCCCTTGTTCATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGTTCACATGAACAAATCAAGTACCTAGTTAGTCAAGCATCCATCAAGCCCTTGTGTGATCTTCTGGTCTGCCCTGATCCACGGATTGTCACAGTTTGTTTAGAAGGGCTTGAGAACATCTTGAAGGTTGGAGAAGCTGAGAAGAATTTGGGCAGTACTAGAGAGGTAAATCTCTATGCTCAGATGATTGACGATGCTGAAGGGTTGGAAAAAATTGAGAATTTACAAAGTCATGACAACACTGAGATCTATGAGAAGGCAGTGAAGATTCTTGAGACATATTGGTTAGAAGAGGAGGATGAGACCATGCCTCCAGGTGATTCTTCCCAACCAGGGTTCCGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAA 1584 0.4628 MSLRPSARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQAQTLPASIHSAAVEKKLEFLPSMVAGVWTDDSNIQLEATTQFRKLLSIERCPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPVFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQTKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQAVIEANIIGPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQASIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGSTREVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDSSQPGFRFGEVPVPTGGFNFS* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0145 527 Pfam Atypical Arm repeat 456 502 IPR032413 -
Vvi14g0145 527 PANTHER IMPORTIN ALPHA 12 500 - -
Vvi14g0145 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
Vvi14g0145 527 MobiDBLite consensus disorder prediction 1 32 - -
Vvi14g0145 527 SUPERFAMILY ARM repeat 9 499 IPR016024 -
Vvi14g0145 527 Pfam Importin beta binding domain 12 94 IPR002652 GO:0006606|GO:0061608
Vvi14g0145 527 PIRSF Importin_alpha 2 526 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vvi14g0145 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 369 IPR000225 GO:0005515
Vvi14g0145 527 MobiDBLite consensus disorder prediction 8 32 - -
Vvi14g0145 527 FunFam Importin subunit alpha 72 495 - -
Vvi14g0145 527 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Vvi14g0145 527 Gene3D - 73 495 IPR011989 -
Vvi14g0145 527 Gene3D - 11 50 IPR036975 GO:0006606
Vvi14g0145 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 200 IPR000225 GO:0005515
Vvi14g0145 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 158 IPR000225 GO:0005515
Vvi14g0145 527 SMART arm_5 188 230 IPR000225 GO:0005515
Vvi14g0145 527 SMART arm_5 104 145 IPR000225 GO:0005515
Vvi14g0145 527 SMART arm_5 273 313 IPR000225 GO:0005515
Vvi14g0145 527 SMART arm_5 315 356 IPR000225 GO:0005515
Vvi14g0145 527 SMART arm_5 358 398 IPR000225 GO:0005515
Vvi14g0145 527 SMART arm_5 401 441 IPR000225 GO:0005515
Vvi14g0145 527 SMART arm_5 232 271 IPR000225 GO:0005515
Vvi14g0145 527 SMART arm_5 147 187 IPR000225 GO:0005515
Vvi14g0145 527 Pfam Armadillo/beta-catenin-like repeat 189 230 IPR000225 GO:0005515
Vvi14g0145 527 Pfam Armadillo/beta-catenin-like repeat 358 397 IPR000225 GO:0005515
Vvi14g0145 527 Pfam Armadillo/beta-catenin-like repeat 316 356 IPR000225 GO:0005515
Vvi14g0145 527 Pfam Armadillo/beta-catenin-like repeat 274 312 IPR000225 GO:0005515
Vvi14g0145 527 Pfam Armadillo/beta-catenin-like repeat 106 145 IPR000225 GO:0005515
Vvi14g0145 527 Pfam Armadillo/beta-catenin-like repeat 147 186 IPR000225 GO:0005515
Vvi14g0145 527 Pfam Armadillo/beta-catenin-like repeat 243 270 IPR000225 GO:0005515
Vvi14g0145 527 FunFam Importin subunit alpha 11 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0145 Vvi-Chr14 1191322 1199707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0145 130 390 U-box Gene Family AT3G46510 24.521 1.26e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0145 K15042 - vvi:100242672 1035.79