Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0143 ATGGATCCCGAAGGTGGATCCGCCGGATCTTGTTACTACTCCGTTCTCGGAATTCGCAGAGACGCCTCCTCCTCCGATATTCGCACCGCCTATCGGAAACTCGCTCTGAAGTGGCACCCGGACCGGTGGGCGAAGAATCAGGCGCTGGCCGGCGAGGCGAAGCGGCGGTTCCAGCAAATCCAGGAGGCTTACTCAGTTCTGTCTGATGCGAGCAAGAAGTCAATGTACGACGCTGGATTCTACGATCCGATGGAGGAAGATCAGGATTTCTGTGATTTCATGCAAGAGATGTTATCTATGATGAACAATGTGGGAGACGAGCCGGACAGTGTCGAGGACCTCCAGAAGATGTTCGTGGACATGGTCTCCGGAGACGCGTTTAATTTTGACTTCAACGTCAACGCAAATGCACCGTTTGCTCCCAAAAAGTCACCGGTAGCTGGATCCAACGGTGGCGCAGCAAGGCGCAGCAACTCTCGTCGCTAG 486 0.5453 MDPEGGSAGSCYYSVLGIRRDASSSDIRTAYRKLALKWHPDRWAKNQALAGEAKRRFQQIQEAYSVLSDASKKSMYDAGFYDPMEEDQDFCDFMQEMLSMMNNVGDEPDSVEDLQKMFVDMVSGDAFNFDFNVNANAPFAPKKSPVAGSNGGAARRSNSRR* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0143 161 SMART dnaj_3 10 72 IPR001623 -
Vvi14g0143 161 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Vvi14g0143 161 CDD DnaJ 11 69 IPR001623 -
Vvi14g0143 161 SUPERFAMILY Chaperone J-domain 11 84 IPR036869 -
Vvi14g0143 161 Pfam DnaJ domain 12 77 IPR001623 -
Vvi14g0143 161 Gene3D DnaJ domain 6 103 IPR036869 -
Vvi14g0143 161 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Vvi14g0143 161 PANTHER PUTATIVE, EXPRESSED-RELATED 4 145 - -
Vvi14g0143 161 MobiDBLite consensus disorder prediction 138 161 - -
Vvi14g0143 161 PRINTS DnaJ domain signature 31 46 IPR001623 -
Vvi14g0143 161 PRINTS DnaJ domain signature 52 72 IPR001623 -
Vvi14g0143 161 PRINTS DnaJ domain signature 13 31 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0143 Vvi-Chr14 1175195 1176206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0143 7 78 C2H2 Transcription Factor Family AT1G74250 43.836 1.12e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0143 - - vvi:100247806 310.071