LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi14g0138	ATGGACGGTCACGATCTAGAGATGGAAAAAGCTCGACTGCTGAGCCTAGCCCTCGATTTCGGATTCGATGAAGAATCTGCAATGAAATGTTTGGATCGTTTGGTCCATCTCTACGGTGATGATGGTCAAGATTTTATCACCGTGGAGCATTGTGGTGATGATTTTCTTGCAGCGCTTGTTGAATCCGTGGAAGATAGCGAAGATTGGGATGATTTACAAGCTATTGAAACAGAAGCTTGTGGAACTTTGAATGACATGTTTGATAACGATGTCCTTCATGGTTATGGATCAGATTATGGTATTTATAGAGAAGGCTATATCAATGCTACAGAATATTCATATGAACCTCAAAAGCATCAAAATTTTGTACAGTTAGATTCTTCTAGTGACAGTGAAGATTCAAGTTTTAGAATTCTAGACAAGAAGGGTGCTGCACCAACCTCCCCCTCTTGGCCAGATGGAAGCAGTAGTGCATTCACCCAGAGTTCAATCAAACATGCTTCAAGATCTGTGGACTCCAAGATCAGTGTCATTCAAGGTTCAGTTTCATCGATTTCCAATAAAAGGGCACGCTCTCAAATGTCAGAAGATGAAAATGGGACTCTCAGTTATGAGGCCTTACTGGATTTGGATGATTTTGAACTGGCAAATGTCGTGATATTTGGCAACCGGACATTTCGACCACTTCAGCATCAGGCTTGTAAAGCATCTGTGACAAAGAGAGATTGCTTTGTTCTTATGCCCACTGGAGGTGGTAAAAGTTTATGTTACCAGCTTCCAGCTACTCTGCAACCAGGTGTTACAGTCGTTGTATGTCCCTTACTTTCACTCATTCAGGATCAGATAATCACACTGAACCTCAATTTTGGAATACCAGCAACCTTTTTGAGTTCACAACAAACTGCATCCCAAGCAGCAGCTGTCCTCAAAGAGCTAAGGAAAGATAAACCATCTTGCAAGCTCTTGTATGTAACTCCTGAGAGAATTGCTGGAAACTCTACATTCTTTGAGATCCTAAAATCCTTGCATTGGAAGGGACAATTAGCCGGCTTTGTTGTTGATGAGGCACACTGTGTGAGTCAATGGGGACATGATTTCCGTCCAGATTATAGGGAATTAGGATGTCTCAAACAGAATTTTCCTGATGTTCCAGTGATGGCATTAACTGCCACTGCAACACAACCTGTCCGCAAGGACATCTTAAATTCTTTAAGAATCCCCCATGCTCTTGTCCTTGAGACAAGCTTTGATAGATCCAACTTAAAGTATGAAGTGATTGGTAAGACCAAGGAGCCACTGAAGCAGCTTGGACAACTACTAAAGGATCGTTTCAAAAATTTGTGTGGAATTGTATACTGCCTTTCAAAAAGTGAATGTGCAGAGGTTTCAAAGTTTTTGAATGGGAAATGCAAGATCAAGACAGTATACTACCATGCTGGATTATCAGCTCGCCAAAGAATTGACGTTCAAAAGAAGTGGCATACAGGGAAGGTTCACATCATATGTGCGACTATTGCCTTTGGGATGGGAATCAACAAGCCAAATGTTCGTTTTGTTATCCATAATACAATGTCCAAATCAATCGAAAACTATTATCAAGAATCTGGGAGGGCAGGAAGAGATGACCTTCCTGCAGTGTGCATGGCTCTGTACCAGAAGAAGGATTTCAGTCGGGTTGTATGCATGTTACGAAATGGGCATGGATGCAAAAGTGAAACCTTCAAGGAGGCGATGACTCAAGCTCGTAAGATGCAGCAGTACTGTGAACTCAAGACCGAGTGTAGAAGACAAACCTTGCTTGAACATTTTGGAGAATCCTTAGACAGAAAAGCCTGCAAGAACGGCTGTAATCCTTGTGATAACTGTCTCAAAACTTAG	1878	0.418	MDGHDLEMEKARLLSLALDFGFDEESAMKCLDRLVHLYGDDGQDFITVEHCGDDFLAALVESVEDSEDWDDLQAIETEACGTLNDMFDNDVLHGYGSDYGIYREGYINATEYSYEPQKHQNFVQLDSSSDSEDSSFRILDKKGAAPTSPSWPDGSSSAFTQSSIKHASRSVDSKISVIQGSVSSISNKRARSQMSEDENGTLSYEALLDLDDFELANVVIFGNRTFRPLQHQACKASVTKRDCFVLMPTGGGKSLCYQLPATLQPGVTVVVCPLLSLIQDQIITLNLNFGIPATFLSSQQTASQAAAVLKELRKDKPSCKLLYVTPERIAGNSTFFEILKSLHWKGQLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPDVPVMALTATATQPVRKDILNSLRIPHALVLETSFDRSNLKYEVIGKTKEPLKQLGQLLKDRFKNLCGIVYCLSKSECAEVSKFLNGKCKIKTVYYHAGLSARQRIDVQKKWHTGKVHIICATIAFGMGINKPNVRFVIHNTMSKSIENYYQESGRAGRDDLPAVCMALYQKKDFSRVVCMLRNGHGCKSETFKEAMTQARKMQQYCELKTECRRQTLLEHFGESLDRKACKNGCNPCDNCLKT*	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi14g0138	625	Gene3D	-	184	417	IPR027417	-
	Vvi14g0138	625	ProSitePatterns	DEAH-box subfamily ATP-dependent helicases signature.	349	358	IPR002464	-
	Vvi14g0138	625	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	432	590	IPR001650	-
	Vvi14g0138	625	NCBIfam	RecQ family ATP-dependent DNA helicase	220	624	IPR004589	GO:0004386\|GO:0006310
	Vvi14g0138	625	CDD	DEXHc_RecQ	220	417	-	-
	Vvi14g0138	625	Gene3D	-	418	624	IPR027417	-
	Vvi14g0138	625	Pfam	DEAD/DEAH box helicase	228	397	IPR011545	GO:0003676\|GO:0005524
	Vvi14g0138	625	CDD	SF2_C_RecQ	418	551	-	-
	Vvi14g0138	625	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	234	410	IPR014001	-
	Vvi14g0138	625	Pfam	RecQ zinc-binding	554	623	IPR032284	-
	Vvi14g0138	625	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	265	562	IPR027417	-
	Vvi14g0138	625	SMART	helicmild6	460	542	IPR001650	-
	Vvi14g0138	625	PANTHER	DNA HELICASE RECQ FAMILY MEMBER	215	623	-	-
	Vvi14g0138	625	FunFam	ATP-dependent DNA helicase	208	417	-	-
	Vvi14g0138	625	Pfam	Helicase conserved C-terminal domain	434	540	IPR001650	-
	Vvi14g0138	625	SMART	ultradead3	222	426	IPR014001	-
	Vvi14g0138	625	FunFam	ATP-dependent DNA helicase	418	625	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi14g0138	Vvi-Chr14	1129601	1135804	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi14g0138	293	540	Eukaryotic Initiation Factors Gene Family	AT5G11170	26.378	6.22e-09	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi14g0138	K10899		-	vvi:100252922	1247.26