Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0114 ATGGATGATTTGTATAGACTCCAGCATGAAGGCATCTCCATCTCTGGTGCCAACGCCGCTGCTGCGACCATCGATTTCCGCAGATCAGTGGAGAACAGTAACGTGTACCGGTTCGAATCGGTGGAAACGGAGGCCGGTATGTCGGATCTGATCAAGTCTCAGATCGTCAACCATCCTCGGTACCCTAACTTAGTCTCCGCCTACATTGAGTGTCGAAAGGTCGGAGCGCCGCCAGAAATGGCGTCGCTGCTGGAAGAAATCGGCCGAGAGAGTCAACCGATGAACAGTCGCAGCGGAGAAATTGGTGCCGATCCAGAACTCGACGAGTTCATGGAATCGTACTGTGAGGTTCTTCATAGATACAAGGAGGAGCTCTCGAAACCCTTCGATGAAGCGACGTCGTTTTTGAGCGACATCGAGTCGCAGCTCAGTAACCTCTGCAAAGGAGCGTTGACGGCGGGGACCTCGGGAAGCTACTACTCTGATGAAGCAGCTGGGACTTCAGAGGAGGAGTTAAGCTGTGGAGAGGCAGAAGTATCTGAAAGTCAAGAATCTTTGGGTGCTCGCCCAGGTGACCAGGAGCTTAAGGAAATGCTCATGCGCAAGTATAGTGGCTACCTAAGCAGTTTGAGAAAAGAATTCTTGAAGAAACGGAAGAAAGGTAAGTTACCAAAGGATGCAAGGACAATGTTGCTGGAATGGTGGAATACCCATTATAGATGGCCATATCCCACGGAAGATGAGAAATTGAAGCTATCAGAGGTTACTGGACTAGACCAGAAGCAGATTAACAACTGGTTCATAAACCAGAGGAAGCGGCATTGGAAACCATCAGAAGACATGAGATTTGCTCTTATTGATGGTGTCAGCGGCAACATGGGAGGAGGGCCCGTGTTCTTAGACACCAGGGGTGGAACTGGAAGCAATATTTGA 933 0.4984 MDDLYRLQHEGISISGANAAAATIDFRRSVENSNVYRFESVETEAGMSDLIKSQIVNHPRYPNLVSAYIECRKVGAPPEMASLLEEIGRESQPMNSRSGEIGADPELDEFMESYCEVLHRYKEELSKPFDEATSFLSDIESQLSNLCKGALTAGTSGSYYSDEAAGTSEEELSCGEAEVSESQESLGARPGDQELKEMLMRKYSGYLSSLRKEFLKKRKKGKLPKDARTMLLEWWNTHYRWPYPTEDEKLKLSEVTGLDQKQINNWFINQRKRHWKPSEDMRFALIDGVSGNMGGGPVFLDTRGGTGSNI* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0114 310 Pfam Homeobox KN domain 234 273 IPR008422 GO:0003677|GO:0006355
Vvi14g0114 310 ProSitePatterns 'Homeobox' domain signature. 252 275 IPR017970 GO:0000981|GO:0006355
Vvi14g0114 310 ProSiteProfiles 'Homeobox' domain profile. 214 277 IPR001356 GO:0003677
Vvi14g0114 310 SMART KNOX2_2 97 148 IPR005541 GO:0003677|GO:0005634
Vvi14g0114 310 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 284 - -
Vvi14g0114 310 SMART HOX_1 216 281 IPR001356 GO:0003677
Vvi14g0114 310 SUPERFAMILY Homeodomain-like 216 286 IPR009057 -
Vvi14g0114 310 SMART ELK_2 194 215 IPR005539 GO:0003677
Vvi14g0114 310 Pfam ELK domain 194 215 IPR005539 GO:0003677
Vvi14g0114 310 Gene3D - 212 284 - -
Vvi14g0114 310 ProSiteProfiles ELK domain profile. 194 214 IPR005539 GO:0003677
Vvi14g0114 310 SMART KNOX1_2 49 93 IPR005540 GO:0003677|GO:0005634
Vvi14g0114 310 Pfam KNOX2 domain 101 147 IPR005541 GO:0003677|GO:0005634
Vvi14g0114 310 Pfam KNOX1 domain 51 92 IPR005540 GO:0003677|GO:0005634
Vvi14g0114 310 CDD homeodomain 226 278 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0114 Vvi-Chr14 928619 935211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0114 12 293 Homeobox Transcription Factor Family AT1G23380 50.519 3.10e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vvi14g0114 KNOX2 3.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0114 - - vvi:100264808 589.341