Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0111 ATGCTTAATGTAGCATATATATATTTATATATTTTATTTTTCTTCACTGAAGCGATTAAGGCACTGCCATCGTTACCGCCGATTGTAGAAGGTCGTCGCCGGTGCTGGCGGAGTGTGTCAATGGCGACTAGGTTTCCGAGCAAGCACGCCCGTGATCAAGCTCTGGATTTCCAAGGATTTTTGACTGACTTGCAAGATTGGGAACTTTCTCTCAAGGAGAAAGACAAGAAAATGAAAGCGCAGGCTGAGGAAAAGGATGTCCCTACAGCAAGAGGAAATGTGAAGCACTCTAGTAAACTTTCTAGCAGTCCTGGAGTTAGCTTGAGACTAGGCCAATCAAGAAGTGACACAAGACAACACGAGTACTCTAGAAATCATGATGCCATTAGCCGTATATCAAGTAGTTTCATGACTGAAGAGAGCTTGCCTGATGCTGCTTCTGAGAAAGAACTGGGCAACGAGTATTTTAAGCAGAGGAAATTTAAGGAAGCAATTGACTGCTACTCAAGAAGTATTGCCTTATTACCAACAGCTGTGGCTTATGCAAATAGGGCAATGGCCTATATCAAAATCAAGAGATTCCGAGAAGCTGAAGATGACTGTATGGAGGCCTTAAATTTAGATGATCGCTACATAAAGGCGTACTCACGCCGAGCAACAGCCAGAAAAGAACTTGGGAAATTTAAAGAAGCCACTGAGGATGCTGAGTTTGCCCTGCGGTTGGAACCTCAGAACCAAGAAATCAAGAAACAGTATGCTGAGGCCAAATCTTTGTATGAGAAGGAGATTCTTCAGAAGGCATCTGGAGCACTGAAAAGCTCTGTACAAGGACTGCAGAAAGTGGGAAAGTCAGTGGTGGAAGTGAATGCAGACACTCAGGGAGTACGTTCCATCTCAAGTAGTTCTCAAGGGGCAGGAGAGGCTGCAATTCAAGATCGTTTCATGGTCCCAGCAAACACATCCACATCCATGGAGGAAACGGAAAATAAGGGAACTGGAAACAGAAGTAAAGAGAATGGTTATCTTGAAAATGCTGTTCAGAATTCTGGTTTGGAAGATGTTATGAGTAATCACAAAACAGGCCAGCGAGAGATGAAGTCATCATTACAAGAGCTTGCTTCTCGGGCAGCTTCTCGAGCTATGGTTGAAGCTGCAAAAAATATCACAGCACCAAATTCAGCATATCAATTTGAGGTTTCTTGGCGAGGGCTTTTGGGTGATCATGCCCTACAGGCTTCCTATTTGAAGGCCATATCACCAAATGCATTACCGCAGATATTCAAGAATGCGTTGTCTGCTCCTATACTAATTGACATTATAAAGTGCATTGCCACCTTTTTCGTCACAGAAATGGACCTGGCCGTCAAATTTTTAGACAATTTAACCAAAATTTCAAGATTTGACATGATCATCATGTGTCTTTCATCTACAGATAAAACCGATCTACTCAAGATATGGGATGAAGTGTTCTGTAACAAGGCAACTCCATCTGGGTATGCAGACACACTTGGCAAACTGCGTCCAAGGTACTGCTTCAAACAGTGA 1545 0.4304 MLNVAYIYLYILFFFTEAIKALPSLPPIVEGRRRCWRSVSMATRFPSKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGVSLRLGQSRSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRKFKEAIDCYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELGKFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVVEVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLENAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSWRGLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFVTEMDLAVKFLDNLTKISRFDMIIMCLSSTDKTDLLKIWDEVFCNKATPSGYADTLGKLRPRYCFKQ* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0111 514 MobiDBLite consensus disorder prediction 319 338 - -
Vvi14g0111 514 Gene3D Tetratricopeptide repeat domain 136 296 IPR011990 GO:0005515
Vvi14g0111 514 Pfam Potential Monad-binding region of RPAP3 390 479 IPR025986 -
Vvi14g0111 514 SUPERFAMILY TPR-like 144 261 IPR011990 GO:0005515
Vvi14g0111 514 ProSiteProfiles TPR repeat profile. 212 245 IPR019734 GO:0005515
Vvi14g0111 514 Pfam Tetratricopeptide repeat 180 208 IPR019734 GO:0005515
Vvi14g0111 514 PANTHER OS05G0129900 PROTEIN 42 514 - -
Vvi14g0111 514 Coils Coil 64 84 - -
Vvi14g0111 514 SMART tpr_5 145 178 IPR019734 GO:0005515
Vvi14g0111 514 SMART tpr_5 212 245 IPR019734 GO:0005515
Vvi14g0111 514 SMART tpr_5 179 211 IPR019734 GO:0005515
Vvi14g0111 514 MobiDBLite consensus disorder prediction 78 92 - -
Vvi14g0111 514 MobiDBLite consensus disorder prediction 94 113 - -
Vvi14g0111 514 ProSiteProfiles TPR repeat profile. 145 178 IPR019734 GO:0005515
Vvi14g0111 514 MobiDBLite consensus disorder prediction 78 125 - -
Vvi14g0111 514 Pfam Tetratricopeptide repeat 149 177 IPR001440 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0111 149 241 U-box Gene Family AT3G07370 36.170 1.05e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0111 K23002 - vvi:100242521 921.768