Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0104 ATGGTTAAGTGGAATGACCATGCCCAAATGGATCAGAGTGCTACTTTCACTTCACTTATAGACAATTTTGTTGCTGAAGGGATTAACTTTGAGGCAAACAAATCTAGGTGTCTTCCATTTCTACTCCTCATTTTTATACTGCAGACCATCTTCTTTGAGGATTCAAGAGCTGCATATTTTAGGTCTGATGAAAAATATTTTCCATCACAAGTTAGTATCGCAAAGACTATCACTGTTGCTTCATCAGGCCAAGCAAATTTCAGAAAGATTCAAGATGCTATTGATGTCATTCCTTCTGGCAACAACGAGTGGATTCGTATCAAAGTTTCTCCAGGAGTTTATTTTGAGAAGGTAAATATTCCCATAGAAAAACCATACATATTTCTTGAAGGACATGGTGCTGAGGCAACAATAATCAAGTGGGGTGACCATAGTGAAACAAATCAAAGTGCTACTTTCACTTCATCTGCAGACAATTTTGTTGCTAAGGATATTAGCTTCCAGAATAGTTATAATATGCCACTATATCCCACTCCGCCTATTAAACCAGCAGCAGCAGCAACAATCTATGGTGACAAATCTGCCTTTTATAGTTGTGGTTTCGTGGGATTACAAGATACGTTATGGGATGTATCCGGCCGACACTACTTCAGTCATTGCTACATAGAAGGGGCAGTGGATTTCATCTGTGGTGATGGTCAATCTTTTTATGAGAATTGTCATATAAAAGTGAATGGTCGGTTGCTACCTTCAGGAGCATGGGGAGGTTATATAACAGCACAGAAGAGAAGTTCACCAAGTGATCATAGTGGCTTTGTGTTTCATGGGGGGCTTGTTGTAGGGAGTGGTAAATTCTTCCTAGGAAGAGCTTGGGGTCCTTATTCAAGAGTCATATTTCAAGGAACAAGATTTGATATAGATGTGATGCCTGAAGGTTGGGATGCTTGGAGACAGCCCGTAGGGAATTTGGTGTACGTGGAGCAAGGCTGCAGTGGAAAAGGATCAGACGTTAGAAAGCGGGTTGAATGGTCCAAACATAGCTTGAATGAATCCGAGATGCAACTCTATTCAAGAGCTTACTTCATCCAAGATACTTGGCTTGCAACTCAACCAGGAAGATATGACTAA 1128 0.406 MVKWNDHAQMDQSATFTSLIDNFVAEGINFEANKSRCLPFLLLIFILQTIFFEDSRAAYFRSDEKYFPSQVSIAKTITVASSGQANFRKIQDAIDVIPSGNNEWIRIKVSPGVYFEKVNIPIEKPYIFLEGHGAEATIIKWGDHSETNQSATFTSSADNFVAKDISFQNSYNMPLYPTPPIKPAAAATIYGDKSAFYSCGFVGLQDTLWDVSGRHYFSHCYIEGAVDFICGDGQSFYENCHIKVNGRLLPSGAWGGYITAQKRSSPSDHSGFVFHGGLVVGSGKFFLGRAWGPYSRVIFQGTRFDIDVMPEGWDAWRQPVGNLVYVEQGCSGKGSDVRKRVEWSKHSLNESEMQLYSRAYFIQDTWLATQPGRYD* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0104 375 Gene3D - 70 374 IPR012334 -
Vvi14g0104 375 Pfam Pectinesterase 77 364 IPR000070 GO:0030599|GO:0042545
Vvi14g0104 375 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 68 368 - -
Vvi14g0104 375 FunFam Pectinesterase 71 371 - -
Vvi14g0104 375 SUPERFAMILY Pectin lyase-like 73 367 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0104 Vvi-Chr14 807800 817337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0104 69 317 Carbohydrate Esterase AT2G19150 49.398 2.11e-77 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0104 - - vvi:100259731 690.263