Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0103 ATGCTCAATCCGTCATCGTTGTCGATAAGTCCGGCCATGGAAATTTTTCCACAGTTCAAGAAGCCATTGATTCTGTGCCGGAAAACAATACCAGGTGGATACGAATCCGTATCAACCCTGGGATTTACAGAACTCGCACACCTCCAAGACAAAGACAATGGCGGTGCTTATCGTGCTGTTGCTGCCATGGTACATGGAGAGCATATTTCATTCTATGAGTGTGGATTTGTTAGTGTGCAAGATACATTGTGGGACAAAGAAGGTCACCATCTTTTCAAATCTTGCTACATTGAGGGCCACGTAGACTTCATCTTTGGCGACGGCACTTCGGTTTATGAGGATTGCAAACTAAACTCAATTGGCTCTGGTTACATAACTGCACAGAAGAGAGAAAGCCCTCAAGCAGAATCTGGTTTTGTGTTCAAATCTGCAGAACTATATGGGGTTGGTCCAACATATCTTGGTAGGGCATATGGACCTTATTCAAGGGTATTGTTCTATCAATCGAAATTTGCAAACATTGTGAGACCAGAGGGATGGGATAGTATTGGAGAAGACCCGAACCAACTAACTTATGCGGAGGTAGAGTGTACCGGCGAAGGGGCGGATACTTCAAAACGAGTTCCTTGGTTAAAGAAACTTGACGGAACTCAAGAGCTACAATATCTTCTTAGCCCATCTTTCAATGACAAGGATGGATGGATAGAAGACCAACCCACATTTTATTGA 729 0.4376 MLNPSSLSISPAMEIFPQFKKPLILCRKTIPGGYESVSTLGFTELAHLQDKDNGGAYRAVAAMVHGEHISFYECGFVSVQDTLWDKEGHHLFKSCYIEGHVDFIFGDGTSVYEDCKLNSIGSGYITAQKRESPQAESGFVFKSAELYGVGPTYLGRAYGPYSRVLFYQSKFANIVRPEGWDSIGEDPNQLTYAEVECTGEGADTSKRVPWLKKLDGTQELQYLLSPSFNDKDGWIEDQPTFY* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0103 242 SUPERFAMILY Pectin lyase-like 55 235 IPR011050 -
Vvi14g0103 242 Gene3D - 36 242 IPR012334 -
Vvi14g0103 242 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 57 236 - -
Vvi14g0103 242 Pfam Pectinesterase 57 211 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0103 Vvi-Chr14 799206 805020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0103 39 236 Carbohydrate Esterase AT1G05310 39.336 7.94e-48 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0103 - - vvi:100264921 426.402