Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0090 ATGTCGCTGCGGCCCGGTTCTCGCACAGATGTGCGCAAGAAATCCTATAAGACCGGCGTGGACGCTGAGGAGGCTCGCCGGAGAAGAGAGGACAATCTGGTGGAGATCAGGAAGAACAAGCGCGAGGACAATCTCCTTAAAAAGAGGAGGGAGGGGCTTATTCTTCAGTCCCAGCAGTTCTCTTCTGATGCCTCTCAAACCACTGCCGTAGTTGAAAAAAGGTTGGAAAGTATTACTTTGATGGTTCAAGGAGTATGGTCTGATGATCCTGCTTCACAACTGGAAGCAACCACTCAATTCAGAAAGCTACTATCTATTGAGCGCAGCCCTCCAATTGATGAGGTGATCAAAGCAGGTGTTGTTCCCCGATTTGTGGAGTTCCTTGGAAGGCATGATTTGCCCCAGTTGCAATTTGAGGCGGCATGGGCATTGACTAATGTTGCTTCTGGGACATCGGAACATACTCGAGTTGTCATTGAACATGGTGCTGTCCCCATGTTTGTGCAACTTCTTAGCTCTGCCAGCGATGACGTGCGAGAGCAGGCAGTATGGGCTTTGGGTAATGTTGCTGGTGATTCTCCAAGTTGTAGGGATCTTGTTCTTGGTCATGGTGCCCTTATGCCATTATTATCTCAGTTAAATGAACACTCAAAGCTATCTATGTTGAGGAATGCTACATGGACTTTATCTAACTTCTGTCGTGGCAAGCCACCAACACCATTTGAACAGGTGAAGCCTGCATTACCAGTTCTTCGGCAACTCATCCACTTAAATGATGAAGAAGTTCTAACAGATGCTTGCTGGGCTCTATCCTATCTTTCTGATGGCCCCAATGATAAAATTCAGGCCGTGCTTGAAGCAGGTGTTTGTCCACGACTTGTCGAGCTTCTATTGCATCCATCTCCAACTGTTCTTATACCTGCTCTTCGAACAGTGGGAAACATTGTTACGGGTGATGATGCTCAGACTCAGTTTGTAATTGACAACCAAGTGCTCCCTTGTCTCTATCAACTTCTTACGCAAAATCACAAAAAAAGCATCAAGAAAGAAGCTTGTTGGACAATCTCAAATATCACTGCTGGGAACAAAGGTCAAATACAGGCTGTTATTGAGGCTAATATCATCCTCCCTCTTGTAAACCTACTTCAACATGCGGAGTTTGACATCAAAAAGGAGGCTGCTTGGGGTATCTCAAATGCCACGTCTGGAGGCTCTCATGAGCAGATTCAGTTTTTAGTGAGCCAAGGTTGCATAAAGCCCCTGTGCGATCTTCTAATGTGTCCAGACCCAAGGATTGTGACAGTATGCCTCGAGGGCCTTGAGAACATTCTGAAGGTGGGTGAGGCTGACAAAGAATCGGGAAAGAATGGTGGAATCAATCTTTACGCACAAATGATTGATGAGTGTGATGGCTTGGATAAGATTGAGCTGCTGCAGACCCACGACAACAATGAGATATATGAGAAGTCTGTAAAGCTTTTGGAGAGATACTGGGCAGAGGAAGACGAGGAAGTCCAGAATGTCCAGGATGGGGATGGAAATCAACAGGGATTCGGTTTTGGAAGTAGCCAGCCCAACCTTCCTCCAGGTGGCTTTAAATTTGGTTGA 1608 0.4633 MSLRPGSRTDVRKKSYKTGVDAEEARRRREDNLVEIRKNKREDNLLKKRREGLILQSQQFSSDASQTTAVVEKRLESITLMVQGVWSDDPASQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTRVVIEHGAVPMFVQLLSSASDDVREQAVWALGNVAGDSPSCRDLVLGHGALMPLLSQLNEHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPVLRQLIHLNDEEVLTDACWALSYLSDGPNDKIQAVLEAGVCPRLVELLLHPSPTVLIPALRTVGNIVTGDDAQTQFVIDNQVLPCLYQLLTQNHKKSIKKEACWTISNITAGNKGQIQAVIEANIILPLVNLLQHAEFDIKKEAAWGISNATSGGSHEQIQFLVSQGCIKPLCDLLMCPDPRIVTVCLEGLENILKVGEADKESGKNGGINLYAQMIDECDGLDKIELLQTHDNNEIYEKSVKLLERYWAEEDEEVQNVQDGDGNQQGFGFGSSQPNLPPGGFKFG* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0090 535 PIRSF Importin_alpha 2 534 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vvi14g0090 535 SUPERFAMILY ARM repeat 13 502 IPR016024 -
Vvi14g0090 535 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 119 162 IPR000225 GO:0005515
Vvi14g0090 535 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 162 204 IPR000225 GO:0005515
Vvi14g0090 535 MobiDBLite consensus disorder prediction 1 29 - -
Vvi14g0090 535 FunFam Importin subunit alpha 11 50 - -
Vvi14g0090 535 MobiDBLite consensus disorder prediction 7 29 - -
Vvi14g0090 535 Pfam Atypical Arm repeat 460 508 IPR032413 -
Vvi14g0090 535 Gene3D - 76 499 IPR011989 -
Vvi14g0090 535 FunFam Importin subunit alpha 76 499 - -
Vvi14g0090 535 SMART arm_5 108 149 IPR000225 GO:0005515
Vvi14g0090 535 SMART arm_5 236 275 IPR000225 GO:0005515
Vvi14g0090 535 SMART arm_5 193 234 IPR000225 GO:0005515
Vvi14g0090 535 SMART arm_5 319 360 IPR000225 GO:0005515
Vvi14g0090 535 SMART arm_5 405 445 IPR000225 GO:0005515
Vvi14g0090 535 SMART arm_5 362 402 IPR000225 GO:0005515
Vvi14g0090 535 SMART arm_5 277 317 IPR000225 GO:0005515
Vvi14g0090 535 SMART arm_5 151 191 IPR000225 GO:0005515
Vvi14g0090 535 PANTHER IMPORTIN ALPHA 12 503 - -
Vvi14g0090 535 Pfam Importin beta binding domain 12 98 IPR002652 GO:0006606|GO:0061608
Vvi14g0090 535 MobiDBLite consensus disorder prediction 509 523 - -
Vvi14g0090 535 Pfam Armadillo/beta-catenin-like repeat 193 234 IPR000225 GO:0005515
Vvi14g0090 535 Pfam Armadillo/beta-catenin-like repeat 362 401 IPR000225 GO:0005515
Vvi14g0090 535 Pfam Armadillo/beta-catenin-like repeat 109 149 IPR000225 GO:0005515
Vvi14g0090 535 Pfam Armadillo/beta-catenin-like repeat 278 316 IPR000225 GO:0005515
Vvi14g0090 535 Pfam Armadillo/beta-catenin-like repeat 247 274 IPR000225 GO:0005515
Vvi14g0090 535 Pfam Armadillo/beta-catenin-like repeat 319 360 IPR000225 GO:0005515
Vvi14g0090 535 Pfam Armadillo/beta-catenin-like repeat 152 190 IPR000225 GO:0005515
Vvi14g0090 535 Pfam Armadillo/beta-catenin-like repeat 406 443 IPR000225 GO:0005515
Vvi14g0090 535 MobiDBLite consensus disorder prediction 509 535 - -
Vvi14g0090 535 Gene3D - 11 50 IPR036975 GO:0006606
Vvi14g0090 535 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0090 Vvi-Chr14 714517 726771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0090 134 394 U-box Gene Family AT3G46510 22.222 4.28e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0090 K15042 - vvi:100263083 1036.17