Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0058 ATGCCATTGGGAAAATATCACTGTGACTACTGCGACAAGCAATTCCAAGACACGCCTTCTGCTAGAAAGCGCCATCTCCAAGGTCTTCAGCACCAAAGAGCCAAAGCTCTCTGGTACGACTCCTTCAGAGATCCAAATCAGATTCAGGCCGAGGGCTACGGGAAAGGAGTCTGCAATCGCTTCGTTAGAACGGGATTTTGCCAGTATGGTGATTCTTGCAAATATTTTCATCCGAAGCAAAGCTTACAAAATACAAATACTCAATCCATACCAGTGACAGGCTTCCCAGATAATATTCAGTCACTAAGTAATCCAGGGAACCAATTAGTTGGAGGCGGTCCATTGCCAGGTAATGTGGTCAAAGATAGCATGGGAAATTCCTGGGGCAATCTACCTCCATCATTAAAGCCTCCTCCAGAGGGTGGATATCCACCTCTTCCATTTTTGGATTGGGGATGA 459 0.4597 MPLGKYHCDYCDKQFQDTPSARKRHLQGLQHQRAKALWYDSFRDPNQIQAEGYGKGVCNRFVRTGFCQYGDSCKYFHPKQSLQNTNTQSIPVTGFPDNIQSLSNPGNQLVGGGPLPGNVVKDSMGNSWGNLPPSLKPPPEGGYPPLPFLDWG* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0058 152 MobiDBLite consensus disorder prediction 125 152 - -
Vvi14g0058 152 SUPERFAMILY CCCH zinc finger 53 82 IPR036855 GO:0046872
Vvi14g0058 152 FunFam Zinc finger CCCH domain-containing protein 3 3 48 - -
Vvi14g0058 152 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Vvi14g0058 152 SUPERFAMILY beta-beta-alpha zinc fingers 4 61 IPR036236 -
Vvi14g0058 152 PANTHER NUCLEASE-RELATED 1 152 - -
Vvi14g0058 152 Pfam U1 zinc finger 5 38 IPR013085 GO:0008270
Vvi14g0058 152 Gene3D - 49 101 - -
Vvi14g0058 152 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Vvi14g0058 152 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 53 79 IPR000571 GO:0046872
Vvi14g0058 152 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Vvi14g0058 152 Gene3D Classic Zinc Finger 3 48 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0058 29 80 C2H2 Transcription Factor Family AT5G18550 40.385 1.44e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi14g0058 zf-U1 3.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0058 K13152 - vvi:104881371 299.286