Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0043 ATGACAACTGATCTTAATGCTGAACTATCCAAGAAAACTGATGTCTTGGGTCTCAAGGTTTGGGAATTGATTGGGATTGTTGTCGCATTATTCATCATAATTATCCTGTGTGTGTTATCATTGTGTCTCACTTCAAGGAAGAAATCAAGAAGTTCTAGAGATAGGCTTCCCGTTAATCAAATCCCAACTGTTTCAAAGGAAATCAAGGAAGTAAGGGTGGAGCAAGTATCGACAAATGAATTTGTTCCACGTGATGGGATTCTTCTTACCATTCATGACAAATCCAGTGACAAAGAATCAGATAAGGTCCTGGTCCATTTGGGTATGGGGAAGACAAAGAATGGAGATAATAGCAGTCAATCTGGTTCATTTCATCATTTAGAGAAAGATGGATGTGGGTCTCAATCAGGGGAAGAAGGGAGCTCTGGCACAGTTACCGTGTACAAGCCTTCTTCATCATATCCAATAACTGCTCCTTCTCCTCTTGTTGGTTTGCCTGAATTCTCTCATTTGGGTTGGGGTCACTGGTTCACATTAAGGGATCTTGAACTTGCGACAAATCGGTTTTCAAAGGAAAATGTGCTTGGTGAAGGTGGATATGGAGTGGTTTACAGAGGACAGTTGATCAATGGGACGCCAGTGGCAGTTAAAAAGATCCTCAACAACCTGGGTCAAGCAGAGAAAGAATTTAGAGTTGAAGTTGAAGCTATTGGGCATGTGCGCCACAAGAATTTGGTTCGGCTTCTTGGATATTGCATTGAAGGGACCCATAGGATGTTGGTCTATGAGTATGTCAGCAATGGGAATTTGGAGCAATGGCTTCATGGAGCTATGCGCCAGCATGGATTTCTTACTTGGGATGCCCGCATGAAGATTCTTCTCGGGACAGCTAAGGCTCTTGCCTACTTGCATGAGGCCATTGAGCCAAAAGTGGTGCACCGGGACATTAAATCAAGTAACATTTTGATTGATGATGATTTCAATGCCAAGGTTTCTGATTTCGGCCTGGCCAAGTTGTTGGGTGCTGGGAAAAGTCATATCACAACTCGAGTTATGGGAACCTTTGGATATGTGGCTCCTGAATATGCAAATACTGGCCTTTTGAATGAAAAAAGTGATGTTTATAGCTTTGGGGTTGTGCTTTTGGAAGCAATTACTGGAAGAGATCCTGTGGACTATGGTCGCCCTGCCCAAGAGGTTAATCTGGTTGATTGGCTTAAAATGATGGTTGGAAGCAGGAGGTCAGAAGAAGTTGTAGACCCAAACATTGAGGTCAGACCATCTACAAGAGCCTTAAAACGAGCTCTTTTGACTGCTCTGAGATGTGTTGATCCAGATTCTGAGAAGAGACCCAAAATGGGCCAAGTTGTACGTATGCTCGAGTCTGAGGAATATCCCATACCAAGAGAGGATCGAAGGCACCGAAGAACTCAAGCAGGTAGCATGGAGATTGAGTCTCAGAAGGAGAATTCTGACACTGATCAGAGTGAAAATCTGGGTTCAAGGTCAGAGAGTAGAGGCTACCACAGGACATAA 1536 0.4355 MTTDLNAELSKKTDVLGLKVWELIGIVVALFIIIILCVLSLCLTSRKKSRSSRDRLPVNQIPTVSKEIKEVRVEQVSTNEFVPRDGILLTIHDKSSDKESDKVLVHLGMGKTKNGDNSSQSGSFHHLEKDGCGSQSGEEGSSGTVTVYKPSSSYPITAPSPLVGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYRGQLINGTPVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVSNGNLEQWLHGAMRQHGFLTWDARMKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPAQEVNLVDWLKMMVGSRRSEEVVDPNIEVRPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMLESEEYPIPREDRRHRRTQAGSMEIESQKENSDTDQSENLGSRSESRGYHRT* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0043 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Vvi14g0043 511 SUPERFAMILY Protein kinase-like (PK-like) 173 469 IPR011009 -
Vvi14g0043 511 MobiDBLite consensus disorder prediction 461 511 - -
Vvi14g0043 511 FunFam Putative receptor-like serine/threonine-protein kinase 265 476 - -
Vvi14g0043 511 Gene3D Transferase(Phosphotransferase) domain 1 265 476 - -
Vvi14g0043 511 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524
Vvi14g0043 511 SMART serkin_6 189 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0043 511 Gene3D Phosphorylase Kinase; domain 1 171 264 - -
Vvi14g0043 511 FunFam Putative receptor-like protein kinase 171 264 - -
Vvi14g0043 511 Pfam Protein kinase domain 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0043 511 MobiDBLite consensus disorder prediction 461 492 - -
Vvi14g0043 511 MobiDBLite consensus disorder prediction 110 146 - -
Vvi14g0043 511 CDD STKc_IRAK 195 461 - -
Vvi14g0043 511 PANTHER OS01G0323000 PROTEIN 4 492 - -
Vvi14g0043 511 ProSiteProfiles Protein kinase domain profile. 189 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0043 Vvi-Chr14 433742 437729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0043 17 463 Trihelix Transcription Factor Family AT1G70460 40.044 1.08e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vvi14g0043 Pkinase 7.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0043 - - vvi:100261416 966.452