Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0038 ATGGTGAATATGGGAGGTGGCGGAGGCAGCGGTCAAACGATGTCCTTTATGGCTGCAGGCGGTGGCTCCGGTGGCGGCGGATCGGGTGTTGCAGAGGCTCAGTACTCGGGGGCGAAGACGTCTGTATGGTGGGACATAGAGAATTGCCAGGTCCCCAAGGGCTGCGAACCCCACTCCATCGCCCAGAACATAAGCTCAGCTCTGTTCACGATGAACTACAAAGGTCCCGTCTCCATCTCCGCCTACGGCGACACCCATCGGATTCCTCCTCCCGTTCAGCAAGCCCTCTCCAGCACCGGCATCGCCCTCAACCACGTCCCCGCTGGCGTTAAAGATGCAAGCGACAAAAAGATTCTTGTTGACATGCTGTTCTGGGCTGTGGACAATCCTGCACCTGCTAATTATTTGCTCATTTCTGGTGATCGAGACTTCTCGAATGCACTCCATCAGTTGCGCATGAGAAGATACAACATTCTTCTTGCACAACCCCAAAAGGCTTCTGCACCGCTCATTGCAGCAGCAAAGAGCGTGTGGCTCTGGACGAGTCTTCTGGCAGGAGGACTGCCACTAACAAATGGTGAATCACAACAACTTGGTAATAATAGCTATTCCAGTTCTGACACATTACCGATTCCAGTTTCTGATCCCATTCAGACAAATCAATCGGTGGATTCCTTTTCTGAAAATTCCTACTTAGGAAATCAGAAGCTCCCAAATATGGGGAGAACTGCTGATATTAAGTATAAAGGGAAACAAAATCGCCGAAACTTGAATCAACCAAATATACCAAGAACAGCAAGTGCACCACAACAGTTGTCTGGTGCATATAATCCCAATGCCTCCCTTAATGGACATGCTCCAAATTTCTTTTCTGGAAGTCCTGATCCTTCACGAAGCAATGGCCATAACCTCCAGAGCAATTACCAAAATCATTATTCACAACCATTAAGGCCAAACTTCCCTTCGCAACCCACATTTGGACCGTCTAATTCGTTTCCACCAAATCCTCATACCCCTGCTTCTCACATAATGCCTCCCAGGCCTGATGGACCTGGTTTCACCAATGGTCCCCCAAATGTGCCTGATGTTGGTGTGTTAAACATTTCCGAGTACCCCAGCAATGTTCACAATCCTCCAAGTTTTCAACAACGAGATGGAGAGCTGAAAAGAAATTCGAATATTGAGTCTCCAAACCCTGGAAGCTTAAGCGGACAGCAGAAAGGACATATTTTGCATGATACGCCTTCATTTTACCATGATCCTCAGAACAATAGGTACTCTCGTGGACCAGAATTTCCACCCTCATCATCCTCAGCTATGGGTACCACGAATGTTCCCAGTAATGGTATATGGGGATCTCATGGATGCCAAAAACCTTCTGAGTATGTCCAAGGCCTCATAGGGGTTATCTTACTTGCCCTGAACACCCTAAAAAATGAAAAGATTTTGCCTACTGAAGCAAATATAGCTGATTGTATTCGATATGGAGACCCCAAGCACCAAAATACTGATGTTAAGAAGGCCCTGGAAAGTGCTATTGAGCAGCAGATGGTAATTAAGCAAAAATTAGGTACTGTTCAGTTATATGTTGGAAAAAATGACAGACTATGGAAGTGCGTGAACCTTATGGGTGGTAATCCTAAACAGTACTCTAAAGCAACTTGGGATGGAATCCAGAATTTTCTAATATCCCCTGCTGGACGATCTGCGATAATGGCTTCTCAATGCAAGTATGAAGCAGCTATTATTTTAAAGAATATGTGCTTGAAAGACCGTGCTTTGGGAGATGTACTTCAGATTTTGAACATGGTTATCAGTGCAAAGAAATGGATCACACATCTTCAATCAGGATGGCAACCGGTTAACATTTCTCTTCCCGAGTCTAACACTGATTCAGGGGCCATAGCTGCCACATAA 1917 0.4596 MVNMGGGGGSGQTMSFMAAGGGSGGGGSGVAEAQYSGAKTSVWWDIENCQVPKGCEPHSIAQNISSALFTMNYKGPVSISAYGDTHRIPPPVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLIAAAKSVWLWTSLLAGGLPLTNGESQQLGNNSYSSSDTLPIPVSDPIQTNQSVDSFSENSYLGNQKLPNMGRTADIKYKGKQNRRNLNQPNIPRTASAPQQLSGAYNPNASLNGHAPNFFSGSPDPSRSNGHNLQSNYQNHYSQPLRPNFPSQPTFGPSNSFPPNPHTPASHIMPPRPDGPGFTNGPPNVPDVGVLNISEYPSNVHNPPSFQQRDGELKRNSNIESPNPGSLSGQQKGHILHDTPSFYHDPQNNRYSRGPEFPPSSSSAMGTTNVPSNGIWGSHGCQKPSEYVQGLIGVILLALNTLKNEKILPTEANIADCIRYGDPKHQNTDVKKALESAIEQQMVIKQKLGTVQLYVGKNDRLWKCVNLMGGNPKQYSKATWDGIQNFLISPAGRSAIMASQCKYEAAIILKNMCLKDRALGDVLQILNMVISAKKWITHLQSGWQPVNISLPESNTDSGAIAAT* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0038 638 Pfam OST-HTH Associated domain 575 633 IPR025677 -
Vvi14g0038 638 MobiDBLite consensus disorder prediction 252 444 - -
Vvi14g0038 638 MobiDBLite consensus disorder prediction 370 410 - -
Vvi14g0038 638 Pfam NYN domain 39 175 IPR021139 GO:0004540
Vvi14g0038 638 PANTHER LIMKAIN B LKAP 35 516 IPR024768 GO:0005777|GO:0010468
Vvi14g0038 638 Gene3D - 34 182 - -
Vvi14g0038 638 MobiDBLite consensus disorder prediction 327 355 - -
Vvi14g0038 638 MobiDBLite consensus disorder prediction 198 220 - -
Vvi14g0038 638 MobiDBLite consensus disorder prediction 253 326 - -
Vvi14g0038 638 MobiDBLite consensus disorder prediction 417 444 - -
Vvi14g0038 638 CDD PIN_limkain_b1_N_like 39 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0038 Vvi-Chr14 392250 395601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0038 30 259 C2H2 Transcription Factor Family AT5G61190 61.826 6.52e-84 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0038 - - vvi:100242533 1286.17