Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0027 ATGACTAGAAAGAAGGTGAAGCTTGCATACATCACTAATGATTCTGCAAGAAAAGCAACATTCAAGAAAAGGAAGAAGGGTCTGATGAAGAAGGTGAGTGAGTTGAGCACTCTCTGTGGGATTGATGCCTGTGCCATCCTTTATAGCCCATATGACTCTCAGCCTGAAGTCTGGCCTTCCCCTTTGGGAGTCCAACGTGTGCTTGCCCATTTCAAGAAGATGCCTGAGATGGAGCAAAGCAAGAAGATGGTCAACCAGGAGAGCTTCCTCAGGCAAAGGATAGCAAAAGGCAATGAGCAGCTCAAGAAACAGCGCAAGGACAACCGCGAAAAGGAGATTACTCAAGTCATGTACCAGAGCTTGACTGGTAAGGGCCTGCAGAATCTCAATATAGTTGATTTGAATGATCTTGGGTGGATGATTGACCAGAACTTGAAGGATATTCACAAGAGGATTGAGTCTCTCAACAAAGAGGCTCAGTCCCAGGCAGCAGCAGCGGCCGCAGCTGCAGCAGGACAACTGATAAAGACTGGAGGGAAAGCACAGGAGGAGAAACCAGCCTTTGACAGCATGGATGCCATTCAGAGGCAGCAGTGGTTCGTTGACTTGGTGAACCCCAATGAGCAGATGGGCTTTGCTGGAGATGACATGATGCTGCCATTTGGGGACAACAACCACAACGCTCTCTGGCCTAATGGCTTTTTCCCTTGA 711 0.4838 MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPSPLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQSLTGKGLQNLNIVDLNDLGWMIDQNLKDIHKRIESLNKEAQSQAAAAAAAAAGQLIKTGGKAQEEKPAFDSMDAIQRQQWFVDLVNPNEQMGFAGDDMMLPFGDNNHNALWPNGFFP* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0027 236 PANTHER MADS BOX PROTEIN 3 153 - -
Vvi14g0027 236 Coils Coil 145 165 - -
Vvi14g0027 236 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vvi14g0027 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vvi14g0027 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi14g0027 236 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vvi14g0027 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi14g0027 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi14g0027 236 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vvi14g0027 236 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi14g0027 236 FunFam agamous-like MADS-box protein AGL80 13 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0027 Vvi-Chr14 307222 307932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0027 1 174 Type I MADS-box Gene Family AT5G48670 65.169 2.26e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi14g0027 SRF-TF 8.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0027 - - vvi:100254549 461.455