Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0026 ATGGATTTTTTTTTTAAATATAAACGAAGCCCAGATTCAGAGCGCTCTCTCTCGTATGAGCAAATCCACTCCCACTCTCAACACCTGCTGCTGCGAGTTCTTTCTTTCTCTGATCCCCTTATCAGCTCAAAGAGGATGAAAATCTTATTTGAACTCCAAATACTGAATATGTGGTACAGGTGGCATGCTGTCGCATCATGGACATGGGATGCCCAAGATGAAACCTGTGGGATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAACTCCCTGGAGATGATTGCCCACTAATTTGGGGTGCTTGCAACCATGCATTCCATCTCCATTGCATCTTGAAATGGGTGAATTCGCAGACTCCTCAAGCGCATTGCCCCATGTGCCGTAGGGAATGGCAGTTCAAAGGATGA 414 0.4517 MDFFFKYKRSPDSERSLSYEQIHSHSQHLLLRVLSFSDPLISSKRMKILFELQILNMWYRWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0026 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 137 IPR013083 -
Vvi14g0026 137 PANTHER RING BOX 58 136 - -
Vvi14g0026 137 FunFam Anaphase-promoting complex subunit 11 52 137 - -
Vvi14g0026 137 ProSiteProfiles Zinc finger RING-type profile. 87 130 IPR001841 -
Vvi14g0026 137 CDD RING-H2_APC11 73 135 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Vvi14g0026 137 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 60 136 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Vvi14g0026 137 SUPERFAMILY RING/U-box 59 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0026 Vvi-Chr14 278966 286055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0026 87 130 C3H Transcription Factor Family AT1G72220 41.304 3.09e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0026 K03358 - oeu:111382202 193.741