Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0023 ATGATGCAAGGTCAGTCCAGTAGAGCTAGGAAGAGTCCCTTATCTAACAGTTTTCCATCTCACACCCCTAAGCCTCGTGATAAAGATACTGGACATGGCACCAATTCAAAGATGGGAAAGTTCGGGTCAATGGATTTTATCTTGAATGATTTTCCATTGTCCGTGCCATCTGCTGAAATGGGGTTGAGTCAAGACGATGATATGGTACCTTGGTTGAATTATCCCATCGATGAATCTTTACAACATGATTATTGTTCAGATTTCTTGCAAGAATTATCCGGTGTCACTGTAAACGAGTTATCCACTCATTGCAATTTTGCATCCGGGGAGAAGAGGAATAGTAATAATCAGACAATTAAAGATTCCAATACCATTTCTGCACATAATGGTGTGAGTCTAGAACAAGGGAATGCATCTAAAGCTTCTGCAGCAGGTGTTGAGCCTAGTAGGCCGAGAAGTAGCCAGTTATATCCCCCATCATCCCAGCAGTGTCAAACGCTATTTCCATCTATGAGATCAAAAGTTTCAGATCCCATCAGTAATAACACAAGCAATGCTATGCACCATACAGTTTCTGGCAACTCCATTCGGCTTCCAGCTTCCACAAGTGGTTTTTCGAGCACAAAGACCCAGAAGCAAGATCCAGGACAGACTAGAAATAACTCTGGGTTGATGAACTTCTCCCATTTCTCACGACCTGCGGCTCTTGTTAAAGCTAATCTTCAGAACATTGGTGCTATTGCTGGTCCTAGTTCATCAAGCAAAGATAGAATTGGAAGTAAGGATAAGCAGCCTGCTGCCAGCAGTAGAAATCCTGCTGAATCCAGACATGTTGATTCCAGTTGTGGTTTACAGAAGGATGTGGATTCTCATAGTGAACCTGTTATGGTGCCTGCAAGTGTTGATTTAAAACCGGTGGTGGCTAAAACTATGGAGGAACCACTTCCTGCTGAGCAATCCCCAGTCATTTGCCAAGAAGGTGCCTGCAAGAATGAAAAATCCTCCAACCAAGTTCTTGGTGCAAGAACTGCTAAAGGGATTCCAGATGGTGAAAAGACTATAGAGCCAGCAGTTGCTTGTTCTTCTGTTTGCTCAGGCAATAGCGTGGAGAGAGCTTCAAATGACCCAAAACATAATTTAAAGAGAAAATGCCGTGACACAGAGGAGTCTGAATGCCCGAGTGAAGATGTTGAAGAAGAATCAGTGGGTGTGAGAAAATCAGCTCCTGCTAAGGGAGGTACAGGTTCTAAGAGAAGTCGAGCAGCAGAAGTGCATAATTTATCCGAAAGGAGGAGAAGGGACAGGATCAACGAGAAGATGCGTGCATTACAAGAACTCATACCCAACTGCAATAAGGTGGACAAAGCATCAATGCTTGATGAAGCCATTGAGTACTTGAAAACCCTTCAACTTCAAGTACAGATTATGTCAATGGGAACCGGATTGTGCATGCCTCCCATGATGTTGCCGACTGGAATGCAGCACATACATGCAGCTCATATGGGTCACTTTCCACCCATGGGTGTTGGAATGGGCATGGGAATGGGGATGGGTTATGGGATGGGCATGCTTGATATGAATGGTGGTTCTCCCAGTTGCCCCTTTATTCAGGCACCTCCAATGCAAGGAACACATTTCCCTGGTCGACCTATTTCGGTCCCTCCTAATTTGCATGGGATGGTGGGATCCAATCTTCAAGTATTTGGGCTTCCTGGTCAAGGAATTCCCTTGTCGATGCCTCATGCACCATTAATTCCTATGTCTGGGAGTCCCCTTATGAAGTCTTCCATGGCACTGAATGACTCTGGGGCAGCAGGCTCTATGGAAGTTCCTGATTCTGCTCCAGCCTCAAGTTCAAAAGATCTGATACAAAATGTGAACTCACAAGTGATGCAAAACAATGATGCCAATAGCTCAATGGCATCAAGTCAGTGTCAGGAGCAGTCTGCTTTGGTGCAAAAAAATGATCAAGCCCCAGATGTTAGTCACGGTGAAGGTGTTTGA 2004 0.4466 MMQGQSSRARKSPLSNSFPSHTPKPRDKDTGHGTNSKMGKFGSMDFILNDFPLSVPSAEMGLSQDDDMVPWLNYPIDESLQHDYCSDFLQELSGVTVNELSTHCNFASGEKRNSNNQTIKDSNTISAHNGVSLEQGNASKASAAGVEPSRPRSSQLYPPSSQQCQTLFPSMRSKVSDPISNNTSNAMHHTVSGNSIRLPASTSGFSSTKTQKQDPGQTRNNSGLMNFSHFSRPAALVKANLQNIGAIAGPSSSSKDRIGSKDKQPAASSRNPAESRHVDSSCGLQKDVDSHSEPVMVPASVDLKPVVAKTMEEPLPAEQSPVICQEGACKNEKSSNQVLGARTAKGIPDGEKTIEPAVACSSVCSGNSVERASNDPKHNLKRKCRDTEESECPSEDVEEESVGVRKSAPAKGGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGTGLCMPPMMLPTGMQHIHAAHMGHFPPMGVGMGMGMGMGYGMGMLDMNGGSPSCPFIQAPPMQGTHFPGRPISVPPNLHGMVGSNLQVFGLPGQGIPLSMPHAPLIPMSGSPLMKSSMALNDSGAAGSMEVPDSAPASSSKDLIQNVNSQVMQNNDANSSMASSQCQEQSALVQKNDQAPDVSHGEGV* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0023 667 SMART finulus 426 475 IPR011598 GO:0046983
Vvi14g0023 667 MobiDBLite consensus disorder prediction 596 667 - -
Vvi14g0023 667 MobiDBLite consensus disorder prediction 153 226 - -
Vvi14g0023 667 MobiDBLite consensus disorder prediction 612 656 - -
Vvi14g0023 667 MobiDBLite consensus disorder prediction 1 21 - -
Vvi14g0023 667 Pfam Helix-loop-helix DNA-binding domain 424 470 IPR011598 GO:0046983
Vvi14g0023 667 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 417 481 IPR036638 GO:0046983
Vvi14g0023 667 Gene3D - 415 478 IPR036638 GO:0046983
Vvi14g0023 667 MobiDBLite consensus disorder prediction 367 429 - -
Vvi14g0023 667 MobiDBLite consensus disorder prediction 136 226 - -
Vvi14g0023 667 MobiDBLite consensus disorder prediction 1 38 - -
Vvi14g0023 667 MobiDBLite consensus disorder prediction 264 278 - -
Vvi14g0023 667 PANTHER TRANSCRIPTION FACTOR PIF3 1 643 IPR044273 GO:0003700|GO:0006355
Vvi14g0023 667 CDD bHLH_AtPIF_like 420 482 IPR047265 -
Vvi14g0023 667 MobiDBLite consensus disorder prediction 374 390 - -
Vvi14g0023 667 MobiDBLite consensus disorder prediction 247 293 - -
Vvi14g0023 667 FunFam Basic helix-loop-helix transcription factor 415 478 - -
Vvi14g0023 667 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 420 469 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0023 Vvi-Chr14 262785 266595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0023 42 542 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.791 8.99e-72 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi14g0023 HLH 7.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0023 K12126 - vvi:100247781 1306.2