Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0021 ATGGGGAGGCACTCTTGCTGCTACAAGCAGAAGCTGAGGAAAGGCCTGTGGTCTCCCGAGGAAGATGAGAAACTTCTGATGCATATTACCAAGTATGGACATGGGTGTTGGAGCTCCGTCCCTAAACTAGCAGGTTTGCAGAGGTGTGGGAAGAGCTGCAGGCTAAGATGGATTAACTACTTGAGGCCTGATTTGAAGAGGGGAGCATTCTCACAACAGGAAGAGAGCCTGATAATTGAACTCCATGCAGTTCTAGGCAACAGATGGTCGCAGATTGCAGCTCAATTACCGGGAAGAACGGATAATGAAATAAAAAATTTGTGGAACTCCTGCATTAAGAAGAAGCTTAGACAAAAAGGCATCGACCCCAACACTCACAAACCGCTTGTGGAGGCTGAGAACGGACAAGATAAGCTGCCTAATTCCGATAAAAGCAATGAAAAAGCCAATGAACTGAACCTTGTTGAGGCCGAGAATTTAAAGCCACTTTCAACTGCTGCGGAGCAGTATCCAGTTGAAGTTTCTCCCAGTTCCAAGATCAACAGCAGCAGCAATGGAAACAATTTGACACCACCCCAACCCACCCAGGAATTTTTCCTAGATAGATTCGTTACCTCCCATGAAAGCTCCACCACCAGCTGCAGGCCTTCTGGCTTGGTGGGGCATTTCTCTTTTCAGCAGTTGAATTATGGGCCCAATATTGGGCTCTCAGTGAACCCTAATGCCACTCTCTCCTTCAATCCAAACTCCAGGTCTCCTGAGATCATTTCTGAATTCAGTTCTAGTATGACACCCACCATTCTCCCATCCATGTTGAGCACAATTCTCCCCACCCCAACAAGCATTAAGCCTTCCATTAGTCTTCCCTCCAGTAATCCTTCAATAGGCTCTTTTGATGTGAACGGAGTCCAGAACTGGGAAGTCGGCACCTTCAGTAATAATGCCAGCAGCAGCAATGGGAGCAGGAACAGTATTGAACTGCAAAGTAATAGTGCTTTCTTTGAGAACAACTTCTTCTCATTGGGACTGGCAGATTGCGGAAAATCTGATAAAGAAAACCAAATCCATATGTTGGAAGGTGATCCTGAAGACATCAAATGGTCTGAGTATCTCCATACCCCATTTCTATTGGGCACCACACTACAGAACCAAAGCCCTCAACCTATCTATAGTGAGACTAAGCCAGGAATACATTTCACAACAGATGGGTCAAGTACTGGCTGGCATCAGAACCAGCAGGAACAACCCATACAAGCTTCAGCTGACATATATACCAAGGATCTCCAGAGACTTGGTGTGGCTTTTGGACAGATTTGTTAA 1320 0.4591 MGRHSCCYKQKLRKGLWSPEEDEKLLMHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEESLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKGIDPNTHKPLVEAENGQDKLPNSDKSNEKANELNLVEAENLKPLSTAAEQYPVEVSPSSKINSSSNGNNLTPPQPTQEFFLDRFVTSHESSTTSCRPSGLVGHFSFQQLNYGPNIGLSVNPNATLSFNPNSRSPEIISEFSSSMTPTILPSMLSTILPTPTSIKPSISLPSSNPSIGSFDVNGVQNWEVGTFSNNASSSNGSRNSIELQSNSAFFENNFFSLGLADCGKSDKENQIHMLEGDPEDIKWSEYLHTPFLLGTTLQNQSPQPIYSETKPGIHFTTDGSSTGWHQNQQEQPIQASADIYTKDLQRLGVAFGQIC* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0021 439 PANTHER MYB DOMAIN PROTEIN 55 1 328 - -
Vvi14g0021 439 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vvi14g0021 439 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi14g0021 439 SMART sant 13 63 IPR001005 -
Vvi14g0021 439 SMART sant 66 114 IPR001005 -
Vvi14g0021 439 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi14g0021 439 Gene3D - 68 149 - -
Vvi14g0021 439 FunFam MYB transcription factor 68 140 - -
Vvi14g0021 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi14g0021 439 CDD SANT 17 61 IPR001005 -
Vvi14g0021 439 FunFam Myb transcription factor 11 67 - -
Vvi14g0021 439 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vvi14g0021 439 MobiDBLite consensus disorder prediction 122 147 - -
Vvi14g0021 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi14g0021 439 Gene3D - 14 66 - -
Vvi14g0021 439 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi14g0021 439 CDD SANT 69 109 IPR001005 -
Vvi14g0021 439 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0021 Vvi-Chr14 240519 242049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0021 1 437 MYB Transcription Factor Family AT1G09540 45.833 4.67e-117 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g0021 Myb_DNA-binding 6.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0021 K09422 - vvi:100240910 846.269