Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi14g0018 | ATGGGTATTAAGGGTTTAACGAAGCTTCTGGCTGACAATGCCCCAAAGGCCATGAAAGAGCAGAAATTCGAGAGCTTCTTCGGCCGCAAAATCGCCATAGATGCCAGCATGAGCATCTACCAGTTCCTCATTGTTGTTGGAAGAAGTGGGACTGAAATGCTCACAAATGAGGCTGGCGAAGTTACTAGTCATTTGCAAGGAATGTTTTCTCGGACAATTAGGCTTCTGGAGGCTGGATTGAAGCCTGTTTATGTTTTTGATGGGAAGCCTCCAGATTTGAAAAAGCAAGAGCTTGCAAAACGTTTCTCAAGGAGGGCAGATGCCACTGAGGATTTGACAGAAGCCTTAGAGACTGGCAATAAAGAAGAGATTGAAAAATTCAGTAAAAGAACAGTGAAGGTGACAAAGCAACACAACGAAGATTGCAAAAAGCTTTTAAGACTGATGGGAGTGCCTGTAATTGAGGCTCCTTCTGAAGCAGAGGCACAGTGTGCTGCACTTTGCAAATCAGGGAAGGTCTATGCTGTGGCTTCTGAAGACATGGATTCCCTAACTTTTGGAGCTCCTAAATTTCTTCGTCACTTAATGGACCCTAGCTCAAGAAAAATCCCAGTGATGGAATTTGATATTACAAAGATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAGGTATTGGGGGGCAGACTGCATTGAAGCTCATCCGCCAACATGGCTCCATCGAGAATATATTGGAGAACATAAACAGAGAAAGGTACCAGATACCTGATGATTGGCCATATCAAGAGGCTCGGCGCCTTTTTAAAGAACCCCAAGTCTTTTCTGATGATGAGCAACTTGACATCAAGTGGAGTGCTCCAGATGAAGAAGGGTTGATAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAGGCAATAGAAAAAATCAAAACAGCCAAGAATAAATCATCACAGGGCCGATTAGAATCATTCTTTAAACCAGTCGTTAGCTCATCAATACCCATCAAGCGTAAGGAAACAGAGGACAAGGCTGCAAAGGAAACTACTAACAAAAAGTCGAAGGCTGGTGGTGGAAGCAAGAGGAAGAAGTAG | 1155 | 0.432 | MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKRFSRRADATEDLTEALETGNKEEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARRLFKEPQVFSDDEQLDIKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKTAKNKSSQGRLESFFKPVVSSSIPIKRKETEDKAAKETTNKKSKAGGGSKRKK* | 385 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi14g0018 | 384 | Gene3D | - | 223 | 286 | - | - | |
Vvi14g0018 | 384 | Pfam | XPG I-region | 150 | 234 | IPR006086 | GO:0004518 | |
Vvi14g0018 | 384 | Gene3D | - | 10 | 222 | - | - | |
Vvi14g0018 | 384 | SUPERFAMILY | PIN domain-like | 2 | 234 | IPR029060 | - | |
Vvi14g0018 | 384 | ProSitePatterns | XPG protein signature 1. | 80 | 94 | IPR019974 | GO:0016788 | |
Vvi14g0018 | 384 | SMART | xpgn3 | 1 | 108 | IPR006085 | GO:0004518 | |
Vvi14g0018 | 384 | SMART | 53exo3 | 29 | 299 | IPR002421 | GO:0003677 | |
Vvi14g0018 | 384 | MobiDBLite | consensus disorder prediction | 357 | 384 | - | - | |
Vvi14g0018 | 384 | FunFam | Flap endonuclease 1 | 10 | 222 | - | - | |
Vvi14g0018 | 384 | ProSitePatterns | XPG protein signature 2. | 150 | 164 | IPR019974 | GO:0016788 | |
Vvi14g0018 | 384 | Pfam | XPG N-terminal domain | 1 | 107 | IPR006085 | GO:0004518 | |
Vvi14g0018 | 384 | FunFam | Flap endonuclease 1 | 219 | 286 | - | - | |
Vvi14g0018 | 384 | SMART | HhH_4 | 221 | 254 | IPR008918 | GO:0003677|GO:0003824 | |
Vvi14g0018 | 384 | CDD | PIN_FEN1 | 4 | 331 | - | - | |
Vvi14g0018 | 384 | CDD | H3TH_FEN1-Euk | 222 | 289 | - | - | |
Vvi14g0018 | 384 | Hamap | Flap endonuclease 1 [fen]. | 1 | 347 | IPR023426 | GO:0016788 | |
Vvi14g0018 | 384 | PANTHER | FLAP ENDONUCLEASE FAMILY MEMBER | 1 | 374 | IPR006084 | - | |
Vvi14g0018 | 384 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 224 | 239 | IPR006084 | - | |
Vvi14g0018 | 384 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 28 | 42 | IPR006084 | - | |
Vvi14g0018 | 384 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 82 | 101 | IPR006084 | - | |
Vvi14g0018 | 384 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 146 | 163 | IPR006084 | - | |
Vvi14g0018 | 384 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 167 | 187 | IPR006084 | - | |
Vvi14g0018 | 384 | SUPERFAMILY | 5' to 3' exonuclease, C-terminal subdomain | 219 | 351 | IPR036279 | - | |
Vvi14g0018 | 384 | SMART | xpgineu | 147 | 219 | IPR006086 | GO:0004518 | |
Vvi14g0018 | 384 | MobiDBLite | consensus disorder prediction | 357 | 375 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi14g0018 | Vvi-Chr14 | 172844 | 179372 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi14g0018 | 1 | 362 | Core DNA Replication Machinery Family | AT5G26680 | 86.464 | 0.0 | 672 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi14g0018 | K04799 | - | vvi:100242559 | 733.406 |