Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0010 ATGTCTTCTTCTAGACCTACTCAGTCATCCAGCACTTCAGGTCGATCAAAACACAGTGCTAGGATTATTGCTCAGACCACCGTGGATGCAAAGCTACATGCGGATTTTGAGGAGTCAGGTAGTTCATTTGACTACTCAAGTTCAGTGCGTTTTACTCCAGCTGGTGGAGATCAACAGCCCAGATCTGACAAAGTAACAACAGCTTACCTCCATCACATACAGAAAGGCAAACTGATCCAACCATTTGGCTCTTTGTTAGCCCTAGATGAGAAAACTTTCAAAGTCATTGCCTACAGTGAAAATGCCCCTGAAATGTTGACAATGGTTAGTCATGCAGTCCCAAGCGTTGGTGAGCATCCAGTTCTGGGCATTGGTACTGATGTGAGGACCATCTTCAGTGGCCCCAGTGCATCTGCACTGCACAAGGCCTTAGGATTTGGAGAGGTTTCTCTTCTGAATCCCATCTTAGTCCATTGCAAAACCTCAGGGAAGCCCTTTTATGCAATCATCCATAGGGTCACTGGTAGCTTGATCATTGACTTTGAACCGGTGAAGCCTTACGAAGTTCCCATGACTGCTGCTGGTGCCCTGCAATCCTATAAGCTTGCAGCCAAAGCAATCACGAGGTTGCAGTCGCTGCCTAGTGGTAGCTTGGAAAGGCTTTGTGATACAATGGTTCAAGAGGTTTTTGAACTCACTGGTTATGACAGGGTGATGGCTTATAAATTTCATGATGACGACCATGGGGAGGTTGTCTCTGAGATAACAAAGCCAGGCCTTGAGCCATATCTGGGTTTACATTATCCTGCCACAGATATCCCTCAGGCTGCACGTTTCTTATTCATGAAGAATAAGGTCCGAATGATCTGTGATTGTCGTGCAAAACACATACAGGTTCTTCAAGATGAGAAACTCCCATTTGATTTAACATTATGTGGTTCAACACTACGGGCTCCACACAGTTGCCATGTACAGTATATGGAGAACATGAATTCAATTGCTTCTCTTGTTATGGCAGTTGTTGTCAATGACGGGGATGAAGAGGGTGAAAGCTCTAATTCTGGGCAGCCACAGAAGAGAAAGAGGCTTTGGGGTTTAGTGGTTTGCCATCATACAACTCCAAGGTTTGTTCCCTTCCCTCTTCGCTATGCCTGCGAGTTTCTAGCTCAAGTGTTTGCCATCCATGTCAATAAGGAGTTAGAATTAGAAAGTCAGATTCTTGAGAAGAATATTCTGCGTACACAGACACTCTTGTGTGATATGCTGATGCGAGATGCGCCCTTAGGCATAGTGTCACAGAGCCCAAATGTAATGGATCTTGTGAAATGTGATGGAGCTGCTCTACTATACAAAAATAAAGTATGGAGATTGGGAATAACTCCAAGTGACTTCCAGTTGCATGATATCTGTTCATGGCTATCCGAGTACCACATGGATTCAACTGGTTTAAGCACAGATAGCTTGTATGATGCAGGATACCCAGGGGCTCTTGCCCTTGGTGATGCAGTTTGTGGGATGGCAGCTGTGAAGATAACTTCAAAGGATACTCTTTTCTGGTTCCGGTCCCACACAGCTGCAGAAGTCCGATGGGGTGGGGCAAAGCATGAACCGGGTGAGAAGGATGATGGTAGGAAGATGCACCCAAGATCATCATTTAAAGCTTTCCTTGAAGTCGTTAAGACGAGGAGTTTACCTTGGAAGGACTATGAAATGGATGCAATCCATTCTTTGCAGCTTATCCTTAGGAATGCTTTCAAAGATTCTGAGGCCATGGATGTAAACACCAATGCGATCCACACAAAGCTCAATGACCTAAAAATTGAAGGAATGCAAGAGCTAGAAGCAGTGACCAGTGAGATGGTCCGTTTGATTGAAACAGCCAGTGTGCCAATCTTGGCAGTTGATGTTGATGGTCTGGTTAATGGATGGAATACAAAAATTTCTGAGTTGACTAGTCTGCCTGTAGATAAAGCAATTGGGATGCATTTGCTCACGCTTGTGGAAGATTCTTCAGCTGATACTGTAAAAAAGATGTTGCATTTGGCGTTGCAGGGCCAAGAGGAGCAAAATGTCCAATTTGAGATCAAAACGCATGGGTCTAAAAGAGACTCTGGCCCCATCAGCTTAGTTGTAAATGCTTGTGCAAGCAGGGATCTCCATGAAAATGTTGTGGGGGTATGTTTTGTGGCCCAAGATATAACCAGTCAGAAGACGGTGATGGATAAGTTCACCCGAATTGAAGGTGATTACAAAGCAATAGTACAGAACCCAAACCCATTGATTCCCCCAATATTTGGCACAGATGAATTTGGCTGGTGCTCTGAGTGGAATCCGGCAATGGTAAAGTTATCTGGGTGGAATCGGGAAGAAGTTATGGATAAAATGCTTTTAGGGGAAGTGTTTGGGACCCATATGGCATGCTGTCGTCTCAAGAATCGAGAGGCTTTTGTTGGTTTGGGAATTGTGCTCAATAGTGTTATGACTGGTCGGGAATCAGAAAAGGTTTCCTTTGGTTTCTTTTCAAAGAGTGGGAAGTATGTAGAATGCCTGCTTTCTGTGAGCAAGAAATTGGACAGAGAGGGTGCAGTCACTGGGGTATTTTGCTTCTTGCAGTTAGCTAGCCAAGAGCTGCAACAAGCACTTCATATCCAGCGGTTGTCGGAGCAAACTGCCTTGAAGAGATTGAAAGCATTAGCTTATATAAAAAGGCAGATCAAGAATCCTCTTTCTGGGATTATCTTTTCTCGGAAGATGATGGAGGATACTGATTTGGGAGAGGAACAGCAACAGATTCTTCATACTAGTGCCCAGTGCCAGCGTCAACTCAGCAAGATTCTTGATGACCATGATCTTGATAGTATTATTGAAGGTTACTTGGATCTGGAAATGGTCGAGTTTACTCTGCGTGAAGTATTGGTTGCCTCCATCAGCCAGGTCATGATAAAGAGTAATGGAAAGGGTATTCAAATAGTTAATGATGCGGAAGAGGGGATCATGACTGAAACACTCTATGGAGATGGTCTTAGGCTTCAACAGGTGCTAGCTGATTTCTTGTTGATATCAGTAAATTTTACACCAGGTGGAGGCCAGCTTTCTGTTGCAGCTAGTTTGATCAAAGATCGGTTGGGGGAATCTGTCCATCTTGTGCATCTGGAACTCAGGATAACACATGCAGGAAATGGGGTACCAGAACAATTGCTGAACCAGATGTTTGGAAACAATGGAGACGCGTCTGAGGAGGGCATAAGTCTGCTTATCAGCAGGAAACTGGTGAAGCTGATGAATGGGGATGTCCAGTATCTAAGGGAAGCGGGAAAATCGACTTTCATCATATCAATCGAACTAGCTGCTGCTAGAAAGAAGCCACAGGCCTAA 3375 0.4447 MSSSRPTQSSSTSGRSKHSARIIAQTTVDAKLHADFEESGSSFDYSSSVRFTPAGGDQQPRSDKVTTAYLHHIQKGKLIQPFGSLLALDEKTFKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIFSGPSASALHKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHIQVLQDEKLPFDLTLCGSTLRAPHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKRLWGLVVCHHTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNVMDLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAMDVNTNAIHTKLNDLKIEGMQELEAVTSEMVRLIETASVPILAVDVDGLVNGWNTKISELTSLPVDKAIGMHLLTLVEDSSADTVKKMLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLHENVVGVCFVAQDITSQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVKLSGWNREEVMDKMLLGEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSKSGKYVECLLSVSKKLDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIKRQIKNPLSGIIFSRKMMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLEMVEFTLREVLVASISQVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISVNFTPGGGQLSVAASLIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMFGNNGDASEEGISLLISRKLVKLMNGDVQYLREAGKSTFIISIELAAARKKPQA* 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0010 1124 Gene3D - 198 561 IPR029016 -
Vvi14g0010 1124 Gene3D PAS domain 73 320 - -
Vvi14g0010 1124 Gene3D - 874 960 - -
Vvi14g0010 1124 PIRSF Phytochrome_conventional 1 1124 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vvi14g0010 1124 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Vvi14g0010 1124 SMART gaf_1 217 410 IPR003018 GO:0005515
Vvi14g0010 1124 MobiDBLite consensus disorder prediction 1 24 - -
Vvi14g0010 1124 CDD PAS 627 733 IPR000014 -
Vvi14g0010 1124 CDD PAS 760 871 IPR000014 -
Vvi14g0010 1124 Coils Coil 397 417 - -
Vvi14g0010 1124 Pfam GAF domain 217 400 IPR003018 GO:0005515
Vvi14g0010 1124 SUPERFAMILY GAF domain-like 197 397 - -
Vvi14g0010 1124 ProSiteProfiles PAC domain profile. 689 745 IPR000700 -
Vvi14g0010 1124 MobiDBLite consensus disorder prediction 1 23 - -
Vvi14g0010 1124 Pfam Phytochrome region 413 588 IPR013515 GO:0006355|GO:0009584
Vvi14g0010 1124 Pfam His Kinase A (phospho-acceptor) domain 897 952 IPR003661 GO:0000155|GO:0007165
Vvi14g0010 1124 FunFam Phytochrome 405 536 - -
Vvi14g0010 1124 Gene3D PAS domain 610 747 - -
Vvi14g0010 1124 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Vvi14g0010 1124 NCBIfam PAS domain S-box protein 623 739 IPR000014 -
Vvi14g0010 1124 PRINTS Phytochrome signature 132 154 IPR001294 GO:0006355|GO:0009584
Vvi14g0010 1124 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355|GO:0009584
Vvi14g0010 1124 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355|GO:0009584
Vvi14g0010 1124 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355|GO:0009584
Vvi14g0010 1124 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Vvi14g0010 1124 PRINTS Phytochrome signature 232 251 IPR001294 GO:0006355|GO:0009584
Vvi14g0010 1124 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Vvi14g0010 1124 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355|GO:0009584
Vvi14g0010 1124 PRINTS Phytochrome signature 317 338 IPR001294 GO:0006355|GO:0009584
Vvi14g0010 1124 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Vvi14g0010 1124 SMART HisKA_10 893 957 IPR003661 GO:0000155|GO:0007165
Vvi14g0010 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 73 185 IPR035965 -
Vvi14g0010 1124 CDD HisKA 898 948 IPR003661 GO:0000155|GO:0007165
Vvi14g0010 1124 Gene3D PAS domain 762 873 - -
Vvi14g0010 1124 SUPERFAMILY GAF domain-like 408 585 - -
Vvi14g0010 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 729 IPR035965 -
Vvi14g0010 1124 Gene3D - 405 578 IPR043150 -
Vvi14g0010 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 869 IPR035965 -
Vvi14g0010 1124 PANTHER TWO-COMPONENT HISTIDINE KINASE 905 1116 - -
Vvi14g0010 1124 Gene3D - 961 1120 IPR036890 -
Vvi14g0010 1124 CDD HATPase_Phy-like 1004 1115 IPR044767 -
Vvi14g0010 1124 ProSiteProfiles Histidine kinase domain profile. 900 1117 IPR005467 -
Vvi14g0010 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 217 390 IPR016132 -
Vvi14g0010 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 317 326 IPR013516 -
Vvi14g0010 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1113 IPR036890 -
Vvi14g0010 1124 SMART pas_2 618 684 IPR000014 -
Vvi14g0010 1124 SMART pas_2 748 817 IPR000014 -
Vvi14g0010 1124 FunFam Phytochrome 612 743 - -
Vvi14g0010 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1005 1115 IPR003594 -
Vvi14g0010 1124 SMART HKATPase_4 1005 1117 IPR003594 -
Vvi14g0010 1124 Pfam PAS fold 749 871 IPR013767 GO:0006355
Vvi14g0010 1124 Pfam PAS fold 619 733 IPR013767 GO:0006355
Vvi14g0010 1124 Pfam PAS fold 68 184 IPR013654 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0010 Vvi-Chr14 116202 121451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0010 1 1120 Histidine Kinase Gene Family AT1G09570 81.729 0.0 1926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0010 K12120 - vvi:100240824 2194.08