Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0005 ATGGCTTCTTCTATTATAGGCGTTTCTTCTGTTTACCAGACGACGGCTCTTGAGCTTTCTAGAAGGACATCTGCACATTCCCTTTCTCTGCCATTCTCCGATAAGACTCACTTAGGCGTTTTCAAAGCTCCAAACACCAGGGTTCTCTCAGATGCTTCTCTAAGGAGAAGTTTCAAGCAGGGCATTTCCTTCGTTCCCTCTGCCATTGCTACTCCTAATTCGGTGCTGAGTGAAGAGGCCTTCAAAGGTCTCGGTGGTTTCTCTAAAGATCCTTTGGATGTCACTGACACAGATGACGACTACGACCCTGAAATTGAGGCCTCTGCTGCCGCCCAAGAAGACGAACTCGCTCTTGCCCAATTGGGTTTGCCTCCGCGCCTCGTCGAATCCCTCGAACAACGAGGAATTACACATCTCTTCCCCATTCAGAGAGCTGTGTTAGTGCCTGCTCTAGAAGGTCGAGATCTCATTGCCCGGGCAAAGACTGGGACAGGGAAGACATTAGCCTTTGGAATCCCAATTATTAAACGCCTCAGTGAAGATGATGAAAAAAGAACATCTCAGAGGCGGTCTGGACGGCTTCCTAGAGTTTTGGTCCTAGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAGGAAATTAAAGAGTCTGCACCTTATTTGAGCACAGTTTGTGTCTATGGAGGAGTTTCTTATATCACACAGCAAAATGCACTTTCCCGTGGAGTTGACGTTGTGGTTGGCACTCCAGGTAGAATCATTGACCTGATCAAGGGCAACAGCCTCAAATTGGGAGAAGTTCAGAATTTGGTCCTTGATGAAGCTGATCAAATGCTTGCGGTCGGATTTGAGGAAGATGTTGAAGTTATTTTAGAAAAACTCCCATCTGAGCGCCAAAGTATGCTTTTCTCTGCAACCATGCCTGCTTGGGTAAAGAAACTTGCAAGGAAATATTTGGACAATCCTTTGACAATTGATTTGGTGGGTGACCATGATGAAAAGTTGGCAGAAGGCATCAAGCTCTATGCAATACCAACAACTGCAACTTCTAAGCGGACCATTCTTAGTGATCTTATAACGGTCTATGCAAAGGGTGGGAAGACCATTGTTTTCACACAGACAAAGCGAGATGCTGATGAAGTCTCAATGGCACTAACAAATAGCATTGCTTCGGAGGCACTGCATGGTGATATATCTCAGCATCAAAGGGAGAGAACGTTAAATGGTTTCCGTCAAGGAAAATTCACTGTGCTTGTTGCTACTGATGTTGCGGCGCGTGGGCTTGATATTCCTAATGTTGATTTAATTATCCACTATGAATTGCCCAATGATCCAGAGACTTTTGTGCATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGCACTGCCATTCTGATGTTTACTAGTAGCCAGCGGAGAACAGTCAAATCCCTTGAACGTGATGTGGGATGCAAATTTGAGTTTATTAGCCCACCAGCTATTGAAGAGGTTTTGGAGTCATCAGCTGAACAAGTTGTTGCTACTCTTAATGGAGTTCATCCCGAGTCTGTGGAGTTCTTTACCCCAACTGCACAGAAACTGATTGAAGAAAAAGGAACAGGTGCTCTTGCAGCTGCGCTGGCACACCTGAGTGGTTTCTCGCAGCCTCCTTCATTCCGGTCTCTTATTAGCCATGAACAGGGATGGGTGACATTACAATTGACACGTGATTCTGGTTATTCTAGAGGGTTCCTTTCTGCTAGATCTGTCACTGGATTTCTTTCTGATGTTTATCCTACAGCTGCTGATGAATTAGGAAAAATATACTTAGTTGCTGATGAAAGGGTTCAAGGAGCAGTCTTTGATCTTCCAGAGGAGATTGCAAAAGAGCTGCTGAATAAGCAAATGCCACCTGGGAACACTATTTCCAAGATTACAAAGTTGCCTGCTTTGCAAGATGATGGGCCTGCAGGTGACTACTACGGCAGATTTTCCAATAGGGATCGGAGTTCTCGAGGTGGTTCTAGAGAACGGAGAGGTTCTAGGATATCACGTGGTCGGGGCAGCAGCTGGGGCTCTGATGACGATGGTGGTGATGATTTGAATAGGCGTGGTGGCCGGAGTTTCAGATCCAATAATAATTGGTCTCGAAACTTAAGAACCAGTGAGGATGATTGGCTAATTGGTGGTAGGCGATCAAACCGGTCATCATCATCTTTTGGAAGTAGGGAGAGAAGCTTTGGAGGTTCATGCTTCACCTGCGGGAGGTCTGGCCACAGAGCATCAGAGTGTCCAAACAAGCGGGACTATTAG 2295 0.4614 MASSIIGVSSVYQTTALELSRRTSAHSLSLPFSDKTHLGVFKAPNTRVLSDASLRRSFKQGISFVPSAIATPNSVLSEEAFKGLGGFSKDPLDVTDTDDDYDPEIEASAAAQEDELALAQLGLPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKRLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYITQQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAEGIKLYAIPTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSMALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSLERDVGCKFEFISPPAIEEVLESSAEQVVATLNGVHPESVEFFTPTAQKLIEEKGTGALAAALAHLSGFSQPPSFRSLISHEQGWVTLQLTRDSGYSRGFLSARSVTGFLSDVYPTAADELGKIYLVADERVQGAVFDLPEEIAKELLNKQMPPGNTISKITKLPALQDDGPAGDYYGRFSNRDRSSRGGSRERRGSRISRGRGSSWGSDDDGGDDLNRRGGRSFRSNNNWSRNLRTSEDDWLIGGRRSNRSSSSFGSRERSFGGSCFTCGRSGHRASECPNKRDY* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0005 764 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 105 666 - -
Vvi14g0005 764 CDD SF2_C_DEAD 339 468 - -
Vvi14g0005 764 Gene3D - 736 763 - -
Vvi14g0005 764 SMART c2hcfinal6 744 760 IPR001878 GO:0003676|GO:0008270
Vvi14g0005 764 MobiDBLite consensus disorder prediction 722 741 - -
Vvi14g0005 764 ProSiteProfiles Zinc finger CCHC-type profile. 745 760 IPR001878 GO:0003676|GO:0008270
Vvi14g0005 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 479 IPR027417 -
Vvi14g0005 764 MobiDBLite consensus disorder prediction 659 678 - -
Vvi14g0005 764 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 116 144 IPR014014 GO:0003724
Vvi14g0005 764 Pfam GUCT (NUC152) domain 546 646 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vvi14g0005 764 SMART helicmild6 379 459 IPR001650 -
Vvi14g0005 764 Gene3D - 117 329 IPR027417 -
Vvi14g0005 764 FunFam Nucleolar RNA helicase II 347 537 - -
Vvi14g0005 764 MobiDBLite consensus disorder prediction 630 709 - -
Vvi14g0005 764 Pfam DEAD/DEAH box helicase 140 314 IPR011545 GO:0003676|GO:0005524
Vvi14g0005 764 FunFam ATP-dependent RNA helicase RhlE 107 328 - -
Vvi14g0005 764 MobiDBLite consensus disorder prediction 686 700 - -
Vvi14g0005 764 Gene3D - 344 533 IPR027417 -
Vvi14g0005 764 CDD DEADc 127 326 - -
Vvi14g0005 764 CDD GUCT_Hera 554 633 - -
Vvi14g0005 764 SMART ultradead3 135 342 IPR014001 -
Vvi14g0005 764 Pfam Zinc knuckle 744 760 IPR001878 GO:0003676|GO:0008270
Vvi14g0005 764 MobiDBLite consensus disorder prediction 725 740 - -
Vvi14g0005 764 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 325 IPR014001 -
Vvi14g0005 764 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 499 IPR001650 -
Vvi14g0005 764 SUPERFAMILY Retrovirus zinc finger-like domains 729 763 IPR036875 GO:0003676|GO:0008270
Vvi14g0005 764 Pfam Helicase conserved C-terminal domain 351 459 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0005 Vvi-Chr14 29846 37287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0005 121 481 Eukaryotic Initiation Factors Gene Family AT1G72730 36.757 8.07e-65 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0005 - - vvi:100251060 1336.63