Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1559 ATGATCAAGGGAACTCCTGTAAACATCATAGTTGGGTCACATGCGTGGGCTGAGGATCCTGATGCGGCATGGATTGATGGAGAGGTGATAGGAATTGAAGGCAGAAATGCAACAATAGTTACTACAGATGGGAAAACTATAGTTGCAGATATTTCAAACATATACCCAAAAGACACAGAAGCACCGCCTGCTGGGGTCGATGACATGACCAAATTAGCTTACCTCCATGAACCAGGAGTCCTACACAACCTTGCTTCTCGCTTTGCTCTCAATGAGATATATACTTACACGGGGAACATTCTAATAGCGGTGAATCCCTTTCAAAGACTGCCACACTTGTATGACATCCACATGATGGGGCAATACAAAGGCGCTGCTTTTGGAGAGCTTAGTCCACATCTCTTTGCTGTTGCAGATACTTGCTACAGGGCAATGATAAATGAACAGAAAAGCCAATCCATATTGGTTAGTGGAGAGAGTGGAGCTGGTAAAACAGAGACAACAAAAATGCTCATGAGATACCTTGCATTCATGGGGGGCAGATCAGGTACTGAGGGAAGAACAGTAGAACAACAAGTTTTGGAGTCCAACCCAGTCTTGGAAGCATTTGGGAATGCCAAAACTGTGAAAAACAACAATTCCAGTCGTTTTGGTAAATTTGTCGAGATCCAATTTGATAAGCATGGGAAAATCTCTGGGGCTGCAGTTCGTACATATCTTCTCGAAAGGTCACGTGTTTGCCAAGTCTCTGACCCAGAAAGGAACTATCATTGCTTTTACATGCTCTGTGCAGCACCACCAGAGGATGTCAAGAAATTCAAGTTAGGGGACCCAAGATCATTCCACTATCTAAACCAAACTAACTGTTATGAAGTTGCAAATGTAAATGATGCAAGAGAGTATCTGGAAACCAGAAATGCCATGGATGTTGTAGGGATCAGTCAAGATGAGCAGGATGCCATATTCCGTGTGGTAGCTGCAATTCTGCATCTCGGAAACATTGGGTTCATCAAAGGGAAGGAAGCCGATTCTTCCAAACTGAAGGATGAGAAAGCACTTTACCATCTTCGAACAGCTGCAGAGCTACTCATGTGTGATGAGAAGGCATTGGAGGACTCACTGTGCCAGCGTGTCATAGTAACCCCTGATGGAAACATCACAAAACCACTGGATCCAGATTTAGCTGTCTTTAGTCGTGATGCCTTGGCAAAGACAGTATACTCCAGACTATTTGATTGGATTGTCGATAAGATAAACAGTTCTATCGGCCAGGATCCCAATGCAACAAGCATAATTGGAGTTCTTGATATTTATGGCTTTGAGAGCTTCAAGATCAACAGTTTTGAGCAGCTATGTATCAACCTGACAAATGAGAAGTTGCAACAGCATTTTAATCAGCATGTATTTAAGATGGAGCAAGAAGAGTACAAACGAGAGGAAATCAACTGGAGCTATGTAGAATTCATAGATAACCAAGATGTTTTAGATCTGATTGAGAAGAAACCAGGAGGCATAATTGCACTTCTTGATGAAGCCTGTATGTTTCCTAAGTCAACCCATGAGACATTTGCACAAAAGATGTATCAGACATATAAAGGACATAAGCGCTTCAGCAAGCCCAAACTTGCCCGAACAGATTTCACAATCAATCATTATGCAGGGGATGTTATATACCAAGCTGACCAGTTCCTTGACAAAAACAAGGATTACGTTGTAGCAGAACACCAAGCTTTACTAAATGCCTCCAAGTGCCCTTTTGTTGCAAATCTCTTCCCTCTATTATCTGAGGAAGCATCAAAGCAATCAAAGTTCTCTTCCATTGGTACCCGCTTCAAGCAACAACTACAAGCTTTAATGGAAACCTTGAGCACCACAGAACCACATTACATCAGATGTGTAAAGCCCAATGCAGTTTTGAAGCCTGCGATATTTGAGAACTTCAATGTCTTAAACCAGTTAAGATGTGGGGGAGTACTAGAGGCAATCAGGATAAGTTGTGCTGGGTATCCAACAAAAAGGACATTTGATGAGTTCTTTGACCGTTTTGGAATGTTAGCTCCAGATGTTCTAGATGGAGCCGATGAGAAATCAGCATGTATTGCCATCTGTGATAGAATGGGCTTAAAGGGCTATCAGATTGGGAAAACAAAAGTGTTTCTTAGAGCTGGGCAGATGGCTGAATTAGATGCACGAAGAACTGAAGTTTTAGCTAATGCTGCAAGACGCATCCAGAGGCAAATCCAAACACATCTCACCAGAAAAGAGTTCATTAGACAACGAAGGGCTACAATTCATATGCAGAAACTCTGGAGAGCACAACTTGCACGTAAGCTGTATGAAAGTATGAGGAGGGAAGCTGCTTCAGTCTGTGTACAGAAAAATGTACGCGCTCACACAGCAAGGCGAAATTATACAAACCTACAGGCATCAGCAATGGCGATTCAAACTGGATTGAGAGCAATGGCAGCCCGAAATGAATTCAGATACAGAAGAAGAACCAAGGCTGCAACCCTAATTCAGACTCAATGGCGAGGATTCCAAGCTTTTTCTGCCTATAATCAACAGAAGAAGGCAACTCTTACACTTCAATGTCTATGGAGAGGAAGGGCAGCCAGGAAGGAGCTTAGAAAGCTCAGGATGGCTGCAAGAGAAACAGGAGCACTAAAAGAAGCAAAGGACAAGCTAGAGAAGCGTGTTGAAGAGCTAACATGGCGACTAGAATTTGAAAAGCACTTGAGGATCGATGTTGAAGAAGCAAAAGGGCAAGAAATTTCCAAGCTGCAAAATGCTCTACTTGAAATGCAAGTGCAACTAGAAGAAGCCCATGCAGCAATTATCAGAGAGAAAGAAGCAGCAAAGATTGCTATTGAACAAGCTCCACCAGTGCTCAAAGAGGTGCCAGTCGTAGACAACACCAAGATGGATCTACTGAAAAATCAAAATGAGGAACTCGAGGGTGAGGTAAGCGAGCTGAAAAAGATGGTTGCGGAATTTGAGCAAAAGTATTGTGAAGCACAAAAGGAGAACACAGCAAGGCTTAAAGAAGCAGAAGAGTCATTCACGAGGACGTCACAACTTCAAGAGACTATTGAAAGATTAGAATTGAACTTGTCCAACCTCGAAGCAGAGAACCAGGTTCTACGGCAGCAGGCTTTGGTTGCATCAACAAATGAGGACCTCTTTGAAGAAATGAAAATCCTCAAGGATAAGATTGCAAATTTAGAGTCAGAGAATGAGGTTCTCCGCAACCAGCCAACAAGCATAGAGCAAGTAGCCGCTCTTGAAAGGGTTCCACCACAAGTGAAGAGTTTTGATAATGGACATAAAATGGAAGAAGAGCTCCAAACAACAAAAGAGTTGGTGCCTTTTGCCCCAATCCTAACTAAACAACGATCCCTGACAGACAGGCAACAGGAAAACCATGATGTACTAATAAAGTGTCTCATGGAAGACAAGCGATTTGACAAGAACAGGCCTGTTGCTGCCTGTATTGTGTACAAAGCACTTCTTCAGTGGAGATCCTTTGAAGCAGAGAAGACAAATATATTTGATAGGATTATCCACACAATCCGTTCATCTATAGAGAGTCAGGAAAGCATCAGTAATCTAGCATATTGGCTCTCGACAACTTCAACCCTTCTGTTCCTTGTACAAAGTACACTCAAGGCAAGCAATACACCTAATGTGACTTCATTTCGTAGCCGAAATTCACCCACCACTTTGTTCGGTAGAATGGCACAAGGTCTCCGCTCATCTTCATTTCCTATGGGAGTTTCAAGTGGGTACAGTGGAATGGTGGGAAAGCCAAACACGCACTCAAAAGTGGAACCCAAGTACCCTGCCTTACTGTTTAAGCAACATTTAACTGCATATCTTGAAAAAATATATGGGATGATTCGTGATAGCTTAAAGAAAGAGATTAGTCCATTTTTGAACTTGTGCATACAGGCACCCAGATCCACAAGGGCCAGATCAATAAGAGGGTCATCCAAAAATATCCATTCAAATATAGTTGCAAAACAGCAAGCATCAAACATACACTGGCAAAATATTGTCAATAGCCTGGATCATACCTTGGGAATAATGTCTGAGAACCATGTCCCTTCTATGATAACAAGGAAAATCTTCAGTCAGGTATTCTCATTCATAAATGTTCAGCTTTTTAACAGTTTACTACTTCGCCGGGAATGTTGTTCATTTAGCAATGGAGAATACGTAAAGGCTGGTTTGCAGGAATTGGAACAGTGGTGCTTTAAAGCAAAGGACGAGTTTGCTGGATCATCATGGGATGAACTCCAACACATAAGACAAGCAGTAGGGTTTCTGGTTTTGCATCAAAAACCTCAGAAATTTTTGGATGACATCACAAATGAACTCTGCCCGATGTTAAGCATTCCACAAATATATCGCATTGGAACCATGTTTTGGGATGACAAATATGGCACCCATGGACTATCTCCAGATGTAATCGGCAAGATGAGAGTGCTAATGACAGAAGATTCCATAAACATGCCCAATAATTCATTCTTGTTGGATGTTGATTCTCGGATACCTTTCTCTATGGAAGAGATGTCACGATCCTTGATCGACATCAACCTATCCTACGTGGATCCTCCACCCCTCCTTCGTCAGAGATCTGATTTCCATTTCCTCTTGCAGCCAACAGATTGA 4671 0.423 MIKGTPVNIIVGSHAWAEDPDAAWIDGEVIGIEGRNATIVTTDGKTIVADISNIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLASRFALNEIYTYTGNILIAVNPFQRLPHLYDIHMMGQYKGAAFGELSPHLFAVADTCYRAMINEQKSQSILVSGESGAGKTETTKMLMRYLAFMGGRSGTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKHGKISGAAVRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKFKLGDPRSFHYLNQTNCYEVANVNDAREYLETRNAMDVVGISQDEQDAIFRVVAAILHLGNIGFIKGKEADSSKLKDEKALYHLRTAAELLMCDEKALEDSLCQRVIVTPDGNITKPLDPDLAVFSRDALAKTVYSRLFDWIVDKINSSIGQDPNATSIIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYKREEINWSYVEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLARTDFTINHYAGDVIYQADQFLDKNKDYVVAEHQALLNASKCPFVANLFPLLSEEASKQSKFSSIGTRFKQQLQALMETLSTTEPHYIRCVKPNAVLKPAIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFDEFFDRFGMLAPDVLDGADEKSACIAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEVLANAARRIQRQIQTHLTRKEFIRQRRATIHMQKLWRAQLARKLYESMRREAASVCVQKNVRAHTARRNYTNLQASAMAIQTGLRAMAARNEFRYRRRTKAATLIQTQWRGFQAFSAYNQQKKATLTLQCLWRGRAARKELRKLRMAARETGALKEAKDKLEKRVEELTWRLEFEKHLRIDVEEAKGQEISKLQNALLEMQVQLEEAHAAIIREKEAAKIAIEQAPPVLKEVPVVDNTKMDLLKNQNEELEGEVSELKKMVAEFEQKYCEAQKENTARLKEAEESFTRTSQLQETIERLELNLSNLEAENQVLRQQALVASTNEDLFEEMKILKDKIANLESENEVLRNQPTSIEQVAALERVPPQVKSFDNGHKMEEELQTTKELVPFAPILTKQRSLTDRQQENHDVLIKCLMEDKRFDKNRPVAACIVYKALLQWRSFEAEKTNIFDRIIHTIRSSIESQESISNLAYWLSTTSTLLFLVQSTLKASNTPNVTSFRSRNSPTTLFGRMAQGLRSSSFPMGVSSGYSGMVGKPNTHSKVEPKYPALLFKQHLTAYLEKIYGMIRDSLKKEISPFLNLCIQAPRSTRARSIRGSSKNIHSNIVAKQQASNIHWQNIVNSLDHTLGIMSENHVPSMITRKIFSQVFSFINVQLFNSLLLRRECCSFSNGEYVKAGLQELEQWCFKAKDEFAGSSWDELQHIRQAVGFLVLHQKPQKFLDDITNELCPMLSIPQIYRIGTMFWDDKYGTHGLSPDVIGKMRVLMTEDSINMPNNSFLLDVDSRIPFSMEEMSRSLIDINLSYVDPPPLLRQRSDFHFLLQPTD* 1557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1559 1556 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515
Vvi13g1559 1556 Pfam IQ calmodulin-binding motif 857 876 IPR000048 GO:0005515
Vvi13g1559 1556 Pfam IQ calmodulin-binding motif 760 779 IPR000048 GO:0005515
Vvi13g1559 1556 SMART iq_5 735 757 IPR000048 GO:0005515
Vvi13g1559 1556 SMART iq_5 806 828 IPR000048 GO:0005515
Vvi13g1559 1556 SMART iq_5 831 853 IPR000048 GO:0005515
Vvi13g1559 1556 SMART iq_5 783 805 IPR000048 GO:0005515
Vvi13g1559 1556 SMART iq_5 854 876 IPR000048 GO:0005515
Vvi13g1559 1556 SMART iq_5 758 780 IPR000048 GO:0005515
Vvi13g1559 1556 ProSiteProfiles IQ motif profile. 832 861 IPR000048 GO:0005515
Vvi13g1559 1556 ProSiteProfiles IQ motif profile. 855 884 IPR000048 GO:0005515
Vvi13g1559 1556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 786 IPR027417 -
Vvi13g1559 1556 Coils Coil 878 912 - -
Vvi13g1559 1556 Gene3D - 834 883 - -
Vvi13g1559 1556 Gene3D - 734 786 - -
Vvi13g1559 1556 Gene3D - 787 833 - -
Vvi13g1559 1556 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 10 59 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vvi13g1559 1556 Coils Coil 924 944 - -
Vvi13g1559 1556 CDD MYSc_Myo11 78 721 IPR036018 -
Vvi13g1559 1556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 786 884 IPR027417 -
Vvi13g1559 1556 CDD MyosinXI_CBD 1135 1522 IPR037975 GO:0007015
Vvi13g1559 1556 FunFam unconventional myosin-Va 834 882 - -
Vvi13g1559 1556 Gene3D - 441 625 - -
Vvi13g1559 1556 ProSiteProfiles Dilute domain profile. 1184 1499 IPR002710 -
Vvi13g1559 1556 ProSiteProfiles IQ motif profile. 807 836 IPR000048 GO:0005515
Vvi13g1559 1556 ProSiteProfiles IQ motif profile. 759 788 IPR000048 GO:0005515
Vvi13g1559 1556 ProSiteProfiles Myosin motor domain profile. 64 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi13g1559 1556 Pfam Myosin N-terminal SH3-like domain 12 50 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vvi13g1559 1556 PANTHER MYOSIN 56 1487 - -
Vvi13g1559 1556 Pfam Myosin head (motor domain) 66 721 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi13g1559 1556 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi13g1559 1556 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi13g1559 1556 PRINTS Myosin heavy chain signature 151 176 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi13g1559 1556 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi13g1559 1556 PRINTS Myosin heavy chain signature 94 113 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi13g1559 1556 Gene3D Myosin VI head, motor domain, U50 subdomain 314 603 - -
Vvi13g1559 1556 SMART DIL_2 1374 1481 IPR002710 -
Vvi13g1559 1556 Coils Coil 974 1001 - -
Vvi13g1559 1556 SMART MYSc_2a 58 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi13g1559 1556 FunFam Myosin 2 314 430 - -
Vvi13g1559 1556 Gene3D - 669 731 - -
Vvi13g1559 1556 Pfam DIL domain 1375 1478 IPR002710 -
Vvi13g1559 1556 FunFam Myosin heavy chain 254 309 - -
Vvi13g1559 1556 ProSiteProfiles IQ motif profile. 736 763 IPR000048 GO:0005515
Vvi13g1559 1556 FunFam Class V myosin 441 583 - -
Vvi13g1559 1556 Coils Coil 1023 1084 - -
Vvi13g1559 1556 FunFam Myosin XI D 669 731 - -
Vvi13g1559 1556 Gene3D - 254 312 - -
Vvi13g1559 1556 ProSiteProfiles IQ motif profile. 784 813 IPR000048 GO:0005515
Vvi13g1559 1556 Gene3D Kinesin motor domain 67 664 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1559 Vvi-Chr13 24372721 24390809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1559 118 1553 Myosins gene family AT2G31900 76.475 0.0 2295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1559 K10357 - vvi:100266530 3037.67