LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi13g1551	ATGGAATTCTGCCACGTGTTGAATCAGGCATCTTCTCCAACACTGCATCCTACCTATTCTCTCTATCCGCCACCTCTATTTATTCCGCCCTCCCTCCATCTTCCTCAGTGTTTTCTCTCTCTTCAATTTTTCTCTCTAAACCTCCATTGTTTTCTGGTTTTTCTTCTCTTAGAAGCTCAGAATTTGCATTCTCAGATCCCTAGCAGAAGCTTCGGATCCCAAAGCTTCCAAATCCGATCCGAACAGTGTGTTTTTATCGTTCCAATAATCATGTGGAGGTTCAAGCCCTTCATGCCCAAAGAACAAGCTGGGCTTGAAGGTCGTTCTATTGATGTTGGCAATGTAAAGGTTTATGTTCGGAATGCCATTGCTGAGGGAGGGTTCTCTTGTGTTTACTTAGCTCGAGATGCGATAAATTCTTCAAAGCAGTATGCTTTGAAGCACATTATATGTAATGATGAAGAATCGTTGGATTTGGTGAAGAAGGAGATCTTAGTAATGAAAGTTCTTAGAGGGCATCCTAACGTTGTCACGCTTCATGCCCATACGATCTTAGATATGGGGCGGACAAAAGAAGCACTCCTTGTGATGGAATTTTGTGAGAAGTCTTTGGTTAATGTGCTGGAGAGCAGAGGAGCCGGATATTTTGAGGAGAAACAGGTTCTTTCAATTTTTAGGGATGTCTGCAATGCGGTTTTTGCCATGCACTGCCAATCCCCACCCATAGCTCACAGAGACTTAAAAGCTGAGAATCTTCTATTGGGCCCTGATGGATTATGGAAGTTGTGTGATTTTGGAAGCACCTCCACCAATCATAAGCGCTTTGAGAAGCCTGAAGAAATGGGCATTGAAGAAGACAATATCAGAAAGTATACTACACCTGCATATAGAGCTCCTGAGATGTGGGATTTGCTCCGGAGGGAACTTATAAATGAGAAGGTAGACATTTGGGCGCTTGGGTGCCTCCTCTTTCGCATATGCTACTTCAAATCTGCATTTGATGGTGAATCAAAGTTACAAATCTTAAATGGAAACTACCGCATTCCAGAATTGCCAAAATACAGCTCGAATGTGACAGACCTAATCAGGGACATGCTGCAAGCTTCTCCAGACAATCGACCAGACATCACGCAGGTGTGGTTTCGTGTTAATGAGCAATTGCCTGCTGCATTACAGAAGTCATTACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAGGCTTTTCAAAACCATCAAACAAGGCTTCTCCAGTGCCTCGTAGAAGTCCACCACCCCCACCTTCATCTAGAGAACCAACACGGAATCCATCTCCACCATCACTTACCACCAGGGCTGGGGGAGGTGGGGGCTCACTGGGTGCTTTCTGGTCCTCTCAACATGCAAAAGACTCGGCTATAGAGGACAACAGTGGGCCCAAATTTGATGAGGAAACAACTAGCCATAGCACATCAGGAGATCGGTATCGTCCAGAGAACCACTATTATTCCAAAAACTCTAGTCCACCAAAGGAGGCCAATATCCAAACTCGCGGCAGAAGAAATGCACAAGCAAACACATTTAAATCTGAGGAAGTCCCTTCAAAGGACTTTGAAATAAGATTTTTCCAAGAGGATTCTAACCGTGGCACAGAGAGACCAAAAGCATCAAAAGGTGAGAGCACGGCTTCTTTTCAAAATGATGCATTCAACACATTTGTTGCTGAATTTGATACTAGTAAGCTCGGCTCCGGAAGTAATGCTAACAAATCAGCAAAAGAAGAAGAGTTAGAGGCTGAAACAGAGAGGCTGAAAGAGCAGCTAAAGCAAGCTAACTTGGAGAAGTCTGAAATAACTTCGAAATTTGAAAAGTTATCAGCCATTTGCCGATCCCAGAGGCAAGAGATACAGGAACTCAAGCAAGCTCTTGCTGCTAGAACTCCATCACCCAATAGAGATGCTTCGAAAAACCAAACCTCAACTGGACTTCAGTCTGCTGCCACTCCTCCGCATGGAGAAAAGATTGAAGGCACAGTCTGGGAACTCCAGCAAGGAAAATCTGATTCCCCTGCTCCAGACTCTAAGCCTTGGCAGGCTTTCCCTGATGAGCTCAAACAACATCAGCCTCTTTCCAGGGACAACACTAGCAAATCTGTTAGGACCAGAAATGGTCATCACAACAAACCAGCCACAGAAGCAACTTCTGGCCCTGAAACTTGGGGTTTTGGAACAGAGAGTTTTACAGCCACCCCTGCTGCCAGCTCTAGTTTTTCCAGGCCCACTGTAGGAGGCAATAATGCCCAGCTGTTTGGTGACTCAAAGCGGATTGAGAGCAAGCCAGCTACTCAACCTGCTGGATGGGCTGGTTTCTAA	2364	0.453	MEFCHVLNQASSPTLHPTYSLYPPPLFIPPSLHLPQCFLSLQFFSLNLHCFLVFLLLEAQNLHSQIPSRSFGSQSFQIRSEQCVFIVPIIMWRFKPFMPKEQAGLEGRSIDVGNVKVYVRNAIAEGGFSCVYLARDAINSSKQYALKHIICNDEESLDLVKKEILVMKVLRGHPNVVTLHAHTILDMGRTKEALLVMEFCEKSLVNVLESRGAGYFEEKQVLSIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLGPDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLLRRELINEKVDIWALGCLLFRICYFKSAFDGESKLQILNGNYRIPELPKYSSNVTDLIRDMLQASPDNRPDITQVWFRVNEQLPAALQKSLPDRPPGMNQSAADGHEGFSKPSNKASPVPRRSPPPPPSSREPTRNPSPPSLTTRAGGGGGSLGAFWSSQHAKDSAIEDNSGPKFDEETTSHSTSGDRYRPENHYYSKNSSPPKEANIQTRGRRNAQANTFKSEEVPSKDFEIRFFQEDSNRGTERPKASKGESTASFQNDAFNTFVAEFDTSKLGSGSNANKSAKEEELEAETERLKEQLKQANLEKSEITSKFEKLSAICRSQRQEIQELKQALAARTPSPNRDASKNQTSTGLQSAATPPHGEKIEGTVWELQQGKSDSPAPDSKPWQAFPDELKQHQPLSRDNTSKSVRTRNGHHNKPATEATSGPETWGFGTESFTATPAASSSFSRPTVGGNNAQLFGDSKRIESKPATQPAGWAGF*	788

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi13g1551	787	Gene3D	Transferase(Phosphotransferase) domain 1	100	396	-	-
	Vvi13g1551	787	Pfam	Protein kinase domain	122	379	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi13g1551	787	ProSiteProfiles	Protein kinase domain profile.	117	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi13g1551	787	SUPERFAMILY	Protein kinase-like (PK-like)	119	433	IPR011009	-
	Vvi13g1551	787	MobiDBLite	consensus disorder prediction	636	787	-	-
	Vvi13g1551	787	SMART	serkin_6	117	381	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi13g1551	787	Coils	Coil	584	639	-	-
	Vvi13g1551	787	MobiDBLite	consensus disorder prediction	471	498	-	-
	Vvi13g1551	787	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	242	254	IPR008271	GO:0004672\|GO:0006468
	Vvi13g1551	787	MobiDBLite	consensus disorder prediction	725	769	-	-
	Vvi13g1551	787	MobiDBLite	consensus disorder prediction	645	664	-	-
	Vvi13g1551	787	PANTHER	SERINE/THREONINE PROTEIN KINASE	91	775	-	-
	Vvi13g1551	787	FunFam	probable serine/threonine-protein kinase DDB_G0280111	100	395	-	-
	Vvi13g1551	787	MobiDBLite	consensus disorder prediction	577	600	-	-
	Vvi13g1551	787	CDD	STKc_GAK_like	119	388	-	-
	Vvi13g1551	787	MobiDBLite	consensus disorder prediction	499	528	-	-
	Vvi13g1551	787	MobiDBLite	consensus disorder prediction	529	553	-	-
	Vvi13g1551	787	MobiDBLite	consensus disorder prediction	422	439	-	-
	Vvi13g1551	787	MobiDBLite	consensus disorder prediction	393	561	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi13g1551	Vvi-Chr13	24282951	24288563	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi13g1551	116	382	Miscellaneous Gene Families	AT2G34180	29.537	3.23e-20	93.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Vvi13g1551		Pkinase	3.8e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi13g1551	K08853		-	vvi:100258075	1348.95