Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1549 ATGACCCATCATAAGAACTTAGTGAGGTTGATTGGACTCTGTGATGAAGGGCCAGACAAGCTTTTGGTCTATGAGTTAATGTGCAATGGCACATTGGCTAGCTTCCTTTTTGGAAGTTCAATGCCTGACTGGAAAATGAGAACCCAGATGGCATTTGGGATTGCAAGAGGGCTCATGTACTTACACGAGGAGTGTAGCACACAGATCATCCACTGTGACATCAAGCCCCAAAATGTCCTACTGGATGATTCATTTACAGCAAGGATTTCAGATTTTGGATTGGCAAAGCTTTTGATGAGTGATCAAACTCGGACACTGACAGCCATCAGAGGGACAAAAGGGTACGTCGCACCAGAGTGGTTCAGGAACAAGCCAATCACAGCAAAAGTAGATGTTTATAGTTATGGGGTCATGTTACTGGAGATCATTAGCTGTAGGAAGTGCATTGATTTCCAAACAGAAAATGAAGAGGAAACGATCCTCATTGATTGGGCTTATGATTGCTATAGAGGTCACAGATTGGATAAGCTAGTGGAGAATGATGATGATGCGAGAAGCGACATGAGGAGGCTGGAGAAGCTAGTGATGGTAGCAATTTGGTGCATTCAAGAGGACCCTTCCCTAAGGCCCTCCATGAGAAATGTCACACAGATGCTTGAAGGAGTTGTTGAAGTTCCCATGCCCCCATGCCCTTTCCCCTCTAAGTCAATCTGCTGA 717 0.4491 MTHHKNLVRLIGLCDEGPDKLLVYELMCNGTLASFLFGSSMPDWKMRTQMAFGIARGLMYLHEECSTQIIHCDIKPQNVLLDDSFTARISDFGLAKLLMSDQTRTLTAIRGTKGYVAPEWFRNKPITAKVDVYSYGVMLLEIISCRKCIDFQTENEEETILIDWAYDCYRGHRLDKLVENDDDARSDMRRLEKLVMVAIWCIQEDPSLRPSMRNVTQMLEGVVEVPMPPCPFPSKSIC* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1549 238 SUPERFAMILY Protein kinase-like (PK-like) 2 220 IPR011009 -
Vvi13g1549 238 Gene3D Phosphorylase Kinase; domain 1 1 27 - -
Vvi13g1549 238 SMART serkin_6 1 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1549 238 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 227 - -
Vvi13g1549 238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Vvi13g1549 238 Pfam Protein kinase domain 3 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1549 238 ProSiteProfiles Protein kinase domain profile. 1 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1549 238 Gene3D Transferase(Phosphotransferase) domain 1 28 225 - -
Vvi13g1549 238 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 232 - -
Vvi13g1549 238 Coils Coil 174 194 - -
Vvi13g1549 238 PIRSF ILK 1 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1549 Vvi-Chr13 24274765 24275481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1549 4 221 Receptor kinase-like Gene Family AT1G60800 41.892 3.27e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi13g1549 Pkinase 1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1549 - - vvi:100252934 471.855