Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1548 ATGCTCATGCTTGTTTTAGAGACTGTTTTTCAGAATTTCAAGTTCGCCCATGTAATTTCTAGCTCTAAGCTCCAACAAGCTCAGCATGCCGTGCTCTTGTTACTCTTTGTTCTCCCATCTTGGCCTTCTGTATTTTCTCAAGCTAATCCTGAAATTCGTTTGGGTTCATCCCTTATTGCCTCTGATAACTCTTCCTCATGGAGATCGCCTTCTGGTGAATTCGCCTTTGGATTTCACCAACTTGGCAATCAAAACCTTTTCTTGCTTGCCATCTGGTTTGACAAAATACCAGAGAAAACATTAGCTTGGTATGCAAATGGAGATAATCCGGCACCAGAAGGATCAAAAGTTGAACTCACCTCTGATGGTCAGCTCATACTGAATGATCCAAAAGGGGATGAGATCTGGAGACCCCAGACCACTCTCAACGGGGTCACTCATGCATACATGCTCGATGCAGGCAACTTTGCTCTTGTAAATGGGGATCAAAATTCTACTCATGTATGGGAGAGCTTCAAGAATCCTGTGGACACCGTCTTGCCAACTCAAGTGCTGGAAATTGGTGGCACAGTGTCTTCTCGCCAAGCTGAAAGCAACTACTCAAAGGGGAGGTTCCAGCTCCGTTTGCTGCCTGATGGAAATCTTGTACTTAACACCTTTGACCTGCAAACAAATACTGCATATGATGCTTATTATTGGAGCAAAACCTATGATGCTGCAAATAGGAGCAATTCTGGTGAACGGGTGATTTTTGATGAGTTAGGCCACCTCTATGTCGTTCTACAAAGCGGAGATAATGTTACCCTCAAGTCAGGAAGCGCAGAATCAACCGGAGGTTATTACTACCGAGCAACATTGGATTTTGATGGGGTTTTTAGAATATATACTCGGCCCAAGCTCCAGAGCAATGGAAGCTGGGTTCCGTTCTGGTATGTCCCAAAAGACATTTGCTCCGAGATTGGGGGCGATTTGGGCGGTGGGAGTTGTGGCTTTAACAGTTACTGCGTACCTGACTCAAGTGGAAGGCCTGCTTGTGAGTGCCTTCCGGGGTTTTTCCCTGCTGATCCACATAATAAACTCAATGGCTGCAAGCATAACCTAACACAAAAATGTGAAGCAGGAGGTTCAAATATGGAGGATTTATACCAAAAGCGTGAGGTGTCGAACTTATTTTGGCCTTCTTCTGCAAACTTTGAAAAGAAGGAGTCCCTAAGTGAAGACCTCTGCTGGACATCCTGCTTATATGACTGCAATTGTGTGGTGGCTGTCCATAAAGAAGGCACCTGCAGGAAGAAGAAAATGCCACTTTCAAATGGAAGGGTGGATTGGAGTACTCGTGGGAAGACTCTTGTTAAAGTGCCAAGGTATGACGCTTTTTCAGGTGAGACCCCTTTTCGGGATCCAATCAGGGAGAAGAAGAAAGAACAAGGAACCTTTATTCTTGTGGGGTCAATTCTTCTAGGTAGCTCTGTATTTCTCAACTTCCTACTTGTGGCAGCAATTTCTCTGGTTAGATCTTACCCAAGCCAAAAGAGACGTGAACTTACAAGGGCATCCAGTATTTTGGAAACAAATATACGCTCTTTTACTTACGAAGAACTCAAGCAAGCTGCAGATGGGTTCAGAGAAGAACTTGGAAGAGGTGCTTTTGGCACTGTTTATAAAGGAGTGTTGTCATCATCAAGTTCAGGAACTCAAGTAGCTGTTAAGAAGTTAGACAAGTTAGTCCAAGAGGGTGAGAGGGAATTCAAAACAGAAGTGAGGACAATAGCAATGACCCATCACAAGAATTTAGTAAGATTGATTGGATTTTGTGATGAAGGGCCACACAAGCTTTTGGTCTATGAGTTCATGTGCAATGGCACATTGGCTAGCTTCCTCTTTGGAAGTTCAGCTCCGGACTGGAAAATAAGAACCCAGATGGCATTTGGGGTTGCACGAGGGCTCATGTACTTGCACGAGGAGTGTAGCACACAAATCATCCACTGTGACATCAAGCCCCAAAATGTCCTCTTGGATGATTCGTTCACAGCAAGGATTTCAGATTTTGGATTGGCAAAGCTTCTGATGAGTGATCAAACTCGGACACTTACAGCCATTAGAGGGACCAAAGGATATGTCGCACCAGAATGGTTCAGGAGCAAGCCAATTACAGCAAAAGTGGACGTTTATAGTTATGGAGTCATGTTACTAGAGATCATTAGTTGCAGGAAGTGCATTGATTTCCAAACAGAAAATGAAGAGGAAGCCATCCTCACTGATTGGGCTTATGATTGCTATAGAGGTCACAGATTGGATAAGCTAGTGGAGAATGATGATGATGCTAGAAACGACATGAGGAGGCTGGAGAAGCTAGTGATGGTAGCAATTTGGTGCATTCAAGAGGACCCTTCTCTAAGGCCTTCCATGAGAAATGTCACACAGATGCTTGAAGGAGTTGTTGAAGTTCCCATGCCCCCATGTCCTTTCCCCTCTACTTCAATCCGCTGA 2490 0.4438 MLMLVLETVFQNFKFAHVISSSKLQQAQHAVLLLLFVLPSWPSVFSQANPEIRLGSSLIASDNSSSWRSPSGEFAFGFHQLGNQNLFLLAIWFDKIPEKTLAWYANGDNPAPEGSKVELTSDGQLILNDPKGDEIWRPQTTLNGVTHAYMLDAGNFALVNGDQNSTHVWESFKNPVDTVLPTQVLEIGGTVSSRQAESNYSKGRFQLRLLPDGNLVLNTFDLQTNTAYDAYYWSKTYDAANRSNSGERVIFDELGHLYVVLQSGDNVTLKSGSAESTGGYYYRATLDFDGVFRIYTRPKLQSNGSWVPFWYVPKDICSEIGGDLGGGSCGFNSYCVPDSSGRPACECLPGFFPADPHNKLNGCKHNLTQKCEAGGSNMEDLYQKREVSNLFWPSSANFEKKESLSEDLCWTSCLYDCNCVVAVHKEGTCRKKKMPLSNGRVDWSTRGKTLVKVPRYDAFSGETPFRDPIREKKKEQGTFILVGSILLGSSVFLNFLLVAAISLVRSYPSQKRRELTRASSILETNIRSFTYEELKQAADGFREELGRGAFGTVYKGVLSSSSSGTQVAVKKLDKLVQEGEREFKTEVRTIAMTHHKNLVRLIGFCDEGPHKLLVYEFMCNGTLASFLFGSSAPDWKIRTQMAFGVARGLMYLHEECSTQIIHCDIKPQNVLLDDSFTARISDFGLAKLLMSDQTRTLTAIRGTKGYVAPEWFRSKPITAKVDVYSYGVMLLEIISCRKCIDFQTENEEEAILTDWAYDCYRGHRLDKLVENDDDARNDMRRLEKLVMVAIWCIQEDPSLRPSMRNVTQMLEGVVEVPMPPCPFPSTSIR* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1548 829 ProSiteProfiles Bulb-type lectin domain profile. 49 171 IPR001480 -
Vvi13g1548 829 Pfam D-mannose binding lectin 100 187 IPR001480 -
Vvi13g1548 829 ProSiteProfiles Protein kinase domain profile. 539 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1548 829 SUPERFAMILY Protein kinase-like (PK-like) 521 811 IPR011009 -
Vvi13g1548 829 Pfam S-locus glycoprotein domain 280 353 IPR000858 GO:0048544
Vvi13g1548 829 PIRSF SRK 21 829 IPR024171 GO:0004674
Vvi13g1548 829 Pfam Protein kinase domain 543 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1548 829 Gene3D Phosphorylase Kinase; domain 1 503 617 - -
Vvi13g1548 829 CDD STKc_IRAK 545 812 - -
Vvi13g1548 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 618 818 - -
Vvi13g1548 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
Vvi13g1548 829 ProSitePatterns Protein kinases ATP-binding region signature. 545 571 IPR017441 GO:0005524
Vvi13g1548 829 FunFam Serine/threonine-protein kinase 176 320 - -
Vvi13g1548 829 Gene3D Transferase(Phosphotransferase) domain 1 618 816 - -
Vvi13g1548 829 SMART blect_4 49 175 IPR001480 -
Vvi13g1548 829 Gene3D - 176 317 - -
Vvi13g1548 829 Gene3D - 50 173 IPR036426 -
Vvi13g1548 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 218 IPR036426 -
Vvi13g1548 829 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 58 823 - -
Vvi13g1548 829 CDD B_lectin 69 175 IPR001480 -
Vvi13g1548 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 46 173 - -
Vvi13g1548 829 Coils Coil 765 785 - -
Vvi13g1548 829 FunFam S-receptor-like serine/threonine-protein kinase 509 617 - -
Vvi13g1548 829 SMART serkin_6 539 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1548 Vvi-Chr13 24268648 24274694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1548 525 812 Receptor kinase-like Gene Family AT1G60800 42.712 3.28e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi13g1548 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1548 - - vvi:100252934 1635.93