Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1546 ATGGCTTTTCCTATGCTTCAACATGCCGTGCTCTTGTTACTCTTTGTTTTCCCATCTTGGCCTTTGGTATTTTCTCAAGCTAATCCTGAAATTCGTTTGGGTTCATCCCTTATTGCCTCTGATAACTCTTCCTCATGGAGATCGCCTTCTGGTGAATTTGCCTTAGGATTTCACCAACTTGGCAATCAAAGCCTTTTCTTGCTTGCCATTTGGTTTGAAAAAATACCAGAAAAAACCTTAGTTTGGTATGCAAATGGAGATAACCCGGCTCCAAAAGGGTCCAAAGTTGAACTTACCTCAGATGGCCAGTTCATGCTAAGGGACCCAAAAGGCGAAGAGATCTGGAGACCCCAGAAAGCTGATAATATTGTCTCTCATGCTACCATGCTTGATACTGGTAACTTCGTTCTTGAAGATAGGAATCAGAATCTTACTGTATGGGAGAGCTTCAAGAATCCAGTCAACACCATCCTGCCAACTCAAGTGCTGGAACTTGGTGGCACCCTTTATTCTCAGAAATCAGAAAGCAACTACTCAAAGGGGAGGTTCCAGCTCCGTTTGCAACCTGGTGGCAGTCTTGAACTTATTACCGTGGACCCAGAATCGGGTACTGCATACGAGGCTTATTACCGGAGCAACAGTATCTTTGTTGCTCCAAATAGCGGCGATTCTGTTGAACGGATGATTTTTGATGAATCGGGTCGCATCTATGTTCTTCTAAGGAATGGAACAGGTACTGTTAACATCGCGTCTGGAAGTACATCTTCCAGTGGGGGTCACTACTACAGGGCAACACTCGATCACGATGGAGTTTTCAGGCTATATAACCGCGACAAGAAGGTGGGCAGCCACAATACTTCCTCTTGGTCGGTAATGAAAAACACTCCTTATGATATTTGTGATGCAACCCCAAGTTCTCTTGGCAGTGGTATTTGTGGATTCAACAGCTATTGTATTGTTGATGAAGAAGGGCTCCCTCAGTGTTTGTGCCCAGATGAATACTCTCACTTAGATCCTTCGGACAGAAAACAAGGGTGCAAGCCGAATTTTGAATTGCCCAGCTGCCAAAAAGATGGATGGGAAGGAAATAAGGATGCAGTAGAGTTCAGAGAATTAGCAGCGACTAACTGGCCATTATCGGATTATCAACTTCAGAGGGGACCTGACTTTGACAAGGAGAAGTGTAAACAGTCTTGCAAAGATGATTGCCTCTGTGCGGTTGCTATTCACGGCGGAGATATGTGTTGGAAGAAGAAGTTACCTCTTTCAAATGGAAGACACAGCAAAATTGCTTTTAAATATACTACCGCTCTCATCAAGGTACCCAAAAATAATGCTACACCAAGATGCCGAGATAAGTCGACCCTGACCCTTGTTGGGTCAGTAATCTTTGGCAGCTCTGCCTTCTTTAATCTCTTTTTACTGTCAGCTATTCTTGGAGTTGCTGTCTTCTGCCATCAGAAGAAACCGACAAAACTGAAGTCAGTTTCAAGCAGATTTGCGACAACCATTGTGAGAACTTATTCATACAGAGAGCTTGAAGTGGCGACTCATGGCTTCAAAGAGAAACTAGGCAGAGGGGCTTTTGGAACAGTTTATAAAGGAGTGTTGGCATCAGATCCGGGGGGAGCCGTTGCGGTGAAGAAGTTAGATAAGGTGATTCAAGAAGGCGAGAAGGAATTCGAAACAGAAGTAGCTGCAATCGGCCAGACCCACCATAGGAATTTAGTTGGTTTGCTCGGCTACTGCAATGAGGGAGAGCACCGGCTTCTGGTATACGAATTCATGAGCAATGGATCTTTAGCCAATTTGCTGTTTGGAATATCCAGGCCTGAGTGGAGCCAAAGAGTTCAGATTGCCTCTGGGATTGCGAGAGGGCTAATGTACTTACACGAAGAGTGCCGCACCCAGATCATCCATTGTGATATAAAGCCTCAAAACATACTCCTGGACGACCACTTCACGCCTAGGATTTCAGACTTTGGACTAGCAAAGCTTTTGTTGGCTGATCAGACTCGAATTACTCGAACAGGCATAAGAGGGACCATAGGGTACTTTGCGCCGGAATGGTTCAGGAAAGGATCAATCACAGCTAAAGTTGATGTTTACAGTTATGGTGGTATGTTACTGGAGATGATATGTTGCAAGTCCAGTGTTGTATTTGGGGATAACGAAGAAGAAGAGGCGCTAACGGATTGGGCTTACGAATGCTACATGGGAGGGAAATTGGAGGAGATGGTGGAAGATGATGAGGAAGCAAGGAAGGATATGAAAAGGGTGGAGACGATGGTGAAGGTTGCATTTTGGTGCATCCAAGAGGATCCAGGGCGAAGGCCTACAATGAGGAAGGTTTCACAAATGCTAGATGGTGTAGTTGAAGTTCCTGTGCCCCCTCGCCCCTTTGGAGTTTTCATGAGCTTATCTTGA 2427 0.4512 MAFPMLQHAVLLLLFVFPSWPLVFSQANPEIRLGSSLIASDNSSSWRSPSGEFALGFHQLGNQSLFLLAIWFEKIPEKTLVWYANGDNPAPKGSKVELTSDGQFMLRDPKGEEIWRPQKADNIVSHATMLDTGNFVLEDRNQNLTVWESFKNPVNTILPTQVLELGGTLYSQKSESNYSKGRFQLRLQPGGSLELITVDPESGTAYEAYYRSNSIFVAPNSGDSVERMIFDESGRIYVLLRNGTGTVNIASGSTSSSGGHYYRATLDHDGVFRLYNRDKKVGSHNTSSWSVMKNTPYDICDATPSSLGSGICGFNSYCIVDEEGLPQCLCPDEYSHLDPSDRKQGCKPNFELPSCQKDGWEGNKDAVEFRELAATNWPLSDYQLQRGPDFDKEKCKQSCKDDCLCAVAIHGGDMCWKKKLPLSNGRHSKIAFKYTTALIKVPKNNATPRCRDKSTLTLVGSVIFGSSAFFNLFLLSAILGVAVFCHQKKPTKLKSVSSRFATTIVRTYSYRELEVATHGFKEKLGRGAFGTVYKGVLASDPGGAVAVKKLDKVIQEGEKEFETEVAAIGQTHHRNLVGLLGYCNEGEHRLLVYEFMSNGSLANLLFGISRPEWSQRVQIASGIARGLMYLHEECRTQIIHCDIKPQNILLDDHFTPRISDFGLAKLLLADQTRITRTGIRGTIGYFAPEWFRKGSITAKVDVYSYGGMLLEMICCKSSVVFGDNEEEEALTDWAYECYMGGKLEEMVEDDEEARKDMKRVETMVKVAFWCIQEDPGRRPTMRKVSQMLDGVVEVPVPPRPFGVFMSLS* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1546 808 CDD STKc_IRAK 524 790 - -
Vvi13g1546 808 ProSiteProfiles Bulb-type lectin domain profile. 28 150 IPR001480 -
Vvi13g1546 808 SUPERFAMILY Protein kinase-like (PK-like) 494 788 IPR011009 -
Vvi13g1546 808 Pfam Protein kinase domain 521 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1546 808 Gene3D - 31 152 IPR036426 -
Vvi13g1546 808 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 37 798 - -
Vvi13g1546 808 PIRSF SRK 1 808 IPR024171 GO:0004674
Vvi13g1546 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Vvi13g1546 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 596 796 - -
Vvi13g1546 808 FunFam S-receptor-like serine/threonine-protein kinase 487 595 - -
Vvi13g1546 808 SMART blect_4 28 153 IPR001480 -
Vvi13g1546 808 CDD B_lectin 48 153 IPR001480 -
Vvi13g1546 808 SMART serkin_6 518 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1546 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 25 151 - -
Vvi13g1546 808 ProSitePatterns Protein kinases ATP-binding region signature. 524 549 IPR017441 GO:0005524
Vvi13g1546 808 Gene3D Phosphorylase Kinase; domain 1 481 595 - -
Vvi13g1546 808 Gene3D Transferase(Phosphotransferase) domain 1 596 794 - -
Vvi13g1546 808 Gene3D - 153 303 - -
Vvi13g1546 808 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 201 IPR036426 -
Vvi13g1546 808 Coils Coil 743 763 - -
Vvi13g1546 808 Pfam D-mannose binding lectin 79 164 IPR001480 -
Vvi13g1546 808 ProSiteProfiles Protein kinase domain profile. 518 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1546 808 FunFam Serine/threonine-protein kinase 154 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1546 Vvi-Chr13 24256825 24259251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1546 501 801 Receptor kinase-like Gene Family AT5G38280 44.872 1.60e-70 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi13g1546 Pkinase 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1546 - - vvi:100258065 1635.16