Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1544 ATGGCTGCCAGGTTCTTGCTTCTTCTTGTCCTTCCATCTTTAGTTTTTTCTCAATATTGCACTGATCTTGACATTACCGCCTCCAACGACTCGCCTAGATGTGTATCACCTTCTGGTGAATTTGCGTTTGGGTTTTACCGCCTTGGCAGTCAAAGTCTCTTCTTGCTTGCTATCTGGTTCGAAAAAATACCAGAAAAAACCTTAGTTTGGTATGCAAATGGAGATAACCCGGCTCCTAAAGGATCCAAACTTGAACTTACCTCTGATGGCCAGTTCATACTAAGTGATCCACAAGGCAAAGAGATATGGAGACCTCAGAACTCTGTTACCGCGGTCACTCATGCTGCCATGCTTGATACTGGTAACTTCGTTCTTGAAAATAGGAATCAAAATCTTACAGTGTGGCAGAGCTTCCAGAATCCAGCCAACACCATCTTGCCAACTCAAACACTGGAAATCGGTGGCACCATGTATTCTCAGCAGTCAAACAGCAGCTACTCAAAGGGGAGGTTCCAGCTTCAAATGGAAGCTGGAGGCAATCTCGTACTTAATACCTTGGACCCAGAATCTGGTAAAGCATATGATGTTTATTATTCAAGCAACACCAATGATACTGCAAATAGCAGCAATTCTGGCCAACGGGTGATTTTTGATGAGTCAGGTAGCATCTATGTTCTTCTAAGGAATGGAGGTACTGTTAACATCGCCTCCGGAAGTAGCTTGACGGGAGATTACTATTACCGGGCAACGCTTGACCAGGACGGAGTTTTCAGGCTATATAATCGTGACAACAGCAGTACTTCTTGGTCTGTTGTGAAAAACATTCCCGATAACATTTGTACCGTGACCCCAAGTAATCTTGGCAGTGGAATTTGTGGGTTCAACAGCTATTGTTCCATTGATGGAAGGGGGATGCCTGATTGTCTATGCCCAGATGGGTACTCTCATTTGGATCCTCTTGACAGAAAACAAGGCTGTAAACCGAATTTTGAATTGCCCAGCTGCCAAACAGCTGTTGATGGATGGAAAGCAAACAAGGATGCAGTAGATTTCAGTGAATTAAAAGGTGTCAACTGGCCATTATCTGATTATCAGCTTCAGAAGGGACCTGAATTCAACAAGGAGAAGTGTAAACAGTCTTGCAAAGATGATTGCCTCTGTGTGGTTGCTATCTATAACACTAACAATCAGTGTTGGAAGAAGAAGTTTCCTCTCTCAAATGGAAGACACGAACCTACACAAAATGTCTTCGAGTACTCAACTGCTCTCATCAAGGTACGGATTAAAAATGATACTATAGAGAGATGCCCAGACAAGTCTACCTTGATCCTTGTTGGGTCAGTACTCCTTGGCAGCTCTGTGTTCTTTAATCTCTTTCTGTTGTTAGCAATCCCTGCGGCTGCTCTCTTCTTCTACAACAAGAAACTGATGAATATCCAGTCCGTTTCAAGCAAATTCCCGACCACCAGTGTGAGAACTTATTCATACAAAGAGCTTGAAGAGGCAACCGGTGGATTCAAGGAGAAATTGGGCAGGGGAGCTTTTGGAACAGTTTATAAAGGGGTTTTGGCATCAGATGCTGGGAGATTTGTGGCAGTCAAGAAGTTAGATAAGGTGGTACAGGAAGGCGAGAAGGAATTCAAAACAGAAGTCACTGTGATTGGGCGGACCCACCATAGGAATTTAGTCAGTTTGCTTGGATACTGTGATCAGGGTGTGCACCGGCTTCTGGTATACGAGCACATGAACAATGGATCTTTAGCAGACTTCTTGTTTGGAATATCTACACCTGAATGGAGCCAGAGACTCCAGATAGCCTTTGGGATTGCAAAAGGGCTAATGTATTTACACGAAGAGTGCAGCACCCCCATCATCCATTGTGATATAAAGCCTGAAAACATCCTCCTTGACGAGTACCTTACACCTAGGATTTCAGACTTCGGACTAGCGAAGCTTCTGATGAGAGATCATACTCGGACCCTTACAACAATCAGAGGGACCAAAGGATACGTTGCACCAGAATGGTTCAGGAGCAAGCCGATTACGGCGAAAGTGGATGTTTATAGTTATGGGGTTATGTTACTGGAGATCATCAGTTGCAGGAAGAGCGTACATTCACAGCCGGAAAATGAGGAGGAAGCAATACTTGCTGACTGGGCTTATGATTGCTATAGAGGGCACAGATTGGATAAGCTAGTGAAGAATGATGATGAAGCAGGAAAAGACATGGGGATGCTAGAGAGGGTAGTGATGGTTGCCATTTGGTGCATTCAAGAGGACCCTTCTTTGAGGCCCTCCATGGGAATGGTCATATTGATGCTTCAAGGAGTTGTTGAAGTTGCTGTGCCCCGTAGTCCTTTCCCCTTTAGTTCAACCTTCTGA 2382 0.4442 MAARFLLLLVLPSLVFSQYCTDLDITASNDSPRCVSPSGEFAFGFYRLGSQSLFLLAIWFEKIPEKTLVWYANGDNPAPKGSKLELTSDGQFILSDPQGKEIWRPQNSVTAVTHAAMLDTGNFVLENRNQNLTVWQSFQNPANTILPTQTLEIGGTMYSQQSNSSYSKGRFQLQMEAGGNLVLNTLDPESGKAYDVYYSSNTNDTANSSNSGQRVIFDESGSIYVLLRNGGTVNIASGSSLTGDYYYRATLDQDGVFRLYNRDNSSTSWSVVKNIPDNICTVTPSNLGSGICGFNSYCSIDGRGMPDCLCPDGYSHLDPLDRKQGCKPNFELPSCQTAVDGWKANKDAVDFSELKGVNWPLSDYQLQKGPEFNKEKCKQSCKDDCLCVVAIYNTNNQCWKKKFPLSNGRHEPTQNVFEYSTALIKVRIKNDTIERCPDKSTLILVGSVLLGSSVFFNLFLLLAIPAAALFFYNKKLMNIQSVSSKFPTTSVRTYSYKELEEATGGFKEKLGRGAFGTVYKGVLASDAGRFVAVKKLDKVVQEGEKEFKTEVTVIGRTHHRNLVSLLGYCDQGVHRLLVYEHMNNGSLADFLFGISTPEWSQRLQIAFGIAKGLMYLHEECSTPIIHCDIKPENILLDEYLTPRISDFGLAKLLMRDHTRTLTTIRGTKGYVAPEWFRSKPITAKVDVYSYGVMLLEIISCRKSVHSQPENEEEAILADWAYDCYRGHRLDKLVKNDDEAGKDMGMLERVVMVAIWCIQEDPSLRPSMGMVILMLQGVVEVAVPRSPFPFSSTF* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1544 793 Gene3D Transferase(Phosphotransferase) domain 1 582 781 - -
Vvi13g1544 793 Gene3D Phosphorylase Kinase; domain 1 469 581 - -
Vvi13g1544 793 Pfam Protein kinase domain 507 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1544 793 SMART blect_4 24 141 IPR001480 -
Vvi13g1544 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Vvi13g1544 793 Gene3D - 26 140 IPR036426 -
Vvi13g1544 793 CDD STKc_IRAK 510 776 - -
Vvi13g1544 793 Gene3D - 148 274 IPR036426 -
Vvi13g1544 793 SUPERFAMILY Protein kinase-like (PK-like) 482 774 IPR011009 -
Vvi13g1544 793 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 782 - -
Vvi13g1544 793 CDD B_lectin 35 141 IPR001480 -
Vvi13g1544 793 ProSiteProfiles Bulb-type lectin domain profile. 20 138 IPR001480 -
Vvi13g1544 793 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 148 274 - -
Vvi13g1544 793 ProSiteProfiles Protein kinase domain profile. 504 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1544 793 Pfam D-mannose binding lectin 67 154 IPR001480 -
Vvi13g1544 793 PIRSF SRK 1 793 IPR024171 GO:0004674
Vvi13g1544 793 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 17 139 - -
Vvi13g1544 793 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 203 IPR036426 -
Vvi13g1544 793 ProSitePatterns Protein kinases ATP-binding region signature. 510 535 IPR017441 GO:0005524
Vvi13g1544 793 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 27 785 - -
Vvi13g1544 793 SMART serkin_6 504 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1544 793 FunFam Serine/threonine-protein kinase 142 283 - -
Vvi13g1544 793 FunFam S-receptor-like serine/threonine-protein kinase 473 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1544 Vvi-Chr13 24246454 24248835 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1544 491 790 Receptor kinase-like Gene Family AT5G38280 42.857 4.68e-66 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi13g1544 Pkinase 2.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1544 - - vvi:100246038 1581.23